Gene CPR_1908 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPR_1908 
SymbolsecD 
ID4206020 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens SM101 
KingdomBacteria 
Replicon accessionNC_008262 
Strand
Start bp2106939 
End bp2108198 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content32% 
IMG OID642566458 
Productpreprotein translocase subunit SecD 
Protein accessionYP_699218 
Protein GI110803886 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.154062 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATCAA AATTAGGTAG CTTCATATTA TTTTTTATCT CCATAGCAGT GATAAGTTTT 
TTAGCTCTAG CAGGGTTCAA AGGATTTACA TTAGGGGACT ATCAATTTAA AACGTTTAAT
GAGGTTATAA CTAAAGGATT GGATTTACAA GGTGGAGTTT CTGTTCTTAT GGAAATCCAA
AGTAATGACG TAACAGTAGA TCAATTAAAC ACAACAAAGG AACTTCTATC TTTAAGGGTT
AATAAGGTTG GAGTTTCAGA AACTGTAGTA ACGACAGAGG GAAATAATAG GATAAGAATT
GATATTCCAG GACAATACGA TTCAAAAACT ATAGTGGATT CTCTTCAAAA AACAGGGGAG
TTAACATTTG TAGGGCCTGA GGATGATGTT ATTTTAACAG GTAAAGATGT TGAAAAGTCA
AGTGTATATA TAGACCCTCA AACAGGTAAG CCAGTTATAA AATTAGAGCT TAACGAAGAA
GGTAAGCAAA AGTTTGCTGA GGCAACAAAA AAATATAAAG GCCAAAAAAT AGCTATAAAA
ATGGATAATG AAACATTAAC AGATCCAGTA GTAAATGACA TAATTTCTAA TGGTGAAGCT
ATTATTTCAG GAAATAGATC AATGGAAGAA GCTGAAAAGG TATCTGGAAT AATAAATGCT
GGTGCATTAC CAGTTCCAGT TAAGGCAGTT TCAGTTGAGA CTGTAGGTGC TCAGTTAGGT
GCAAATGCTC TTCCAAATGC TCTGAAAGCA GGAGCAATAG GTGTAGCTAT AATATTCTTA
TTTATGATAC TATACTATAG AGTTCCAGGA TTCATTGCAT GTATGTCACT AAGTGTTTAT
ATATTATTAG TGCTTTATAT ATTTGCATTA GTAGGAGTAA CTCTTACTTT ACCAGGTATA
GCAGCTTTCT TATTAACAGT AGGTATGGCA GTAGATGCTA ACGTACTTAT ATTTGAAAGA
ATCAAAGAAG AACTTGGAAA TGGTAGAAGT ATAACATCAG CTATGAAAAT AGGTTTTAGC
AATGCTTTAA GATCAATAAT GGATTCTAAT ATAACAACCC TTATTGCTGG TTTAGTTCTA
TACTTCTTTG GATCAGGACC AGTTAAAGGA TTTGCTTTAA CATTATTAAT AGGTATTGTA
ATAAGTATGT TTACCGCTAT AATAATGACA AGATTCTTTA TGAATTTAGG ATTCAACATG
GGAATATTAA ATAAGCCTTC AATGTTTGGT CGTATAAAAG GAGGTAGACA TAATGCTTAA
 
Protein sequence
MKSKLGSFIL FFISIAVISF LALAGFKGFT LGDYQFKTFN EVITKGLDLQ GGVSVLMEIQ 
SNDVTVDQLN TTKELLSLRV NKVGVSETVV TTEGNNRIRI DIPGQYDSKT IVDSLQKTGE
LTFVGPEDDV ILTGKDVEKS SVYIDPQTGK PVIKLELNEE GKQKFAEATK KYKGQKIAIK
MDNETLTDPV VNDIISNGEA IISGNRSMEE AEKVSGIINA GALPVPVKAV SVETVGAQLG
ANALPNALKA GAIGVAIIFL FMILYYRVPG FIACMSLSVY ILLVLYIFAL VGVTLTLPGI
AAFLLTVGMA VDANVLIFER IKEELGNGRS ITSAMKIGFS NALRSIMDSN ITTLIAGLVL
YFFGSGPVKG FALTLLIGIV ISMFTAIIMT RFFMNLGFNM GILNKPSMFG RIKGGRHNA