Gene CPR_1878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPR_1878 
Symbol 
ID4205482 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens SM101 
KingdomBacteria 
Replicon accessionNC_008262 
Strand
Start bp2072556 
End bp2073341 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content25% 
IMG OID642566428 
Productpolysaccharide deacetylase family protein 
Protein accessionYP_699188 
Protein GI110802197 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID[TIGR02764] polysaccharide deacetylase family sporulation protein PdaB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.17322e-08 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAATACTT TGAAAAAAAA TAATAATTTT TTTATTTTTA AAAACTTTTT TAATACCATT 
ATTTTAGTTG TTATTATTGC CATATTTACA TTGCCTATTA ATGTTTTTGC AAAAGATAAT
AAGCCAATTC ATTGTGTGGA TAGAGATGAT AAAAAAATTT CTCTGACCTT TGATGTGAAT
TGGGCAGAAA ATGATTATTT ATATGAAATT TTAGATTTAC TAGATAAAAA TAATGTAAAA
GCTACATTTT TTATAATGGG TAAGTGGGTA ATATATCCTG AAGGCAATAG AGAAAAGTTA
ATAGAGATTC ATAAGAGAGG ACATGAAATA GGAAATCATA GTTATGTACA TCCTGATTTT
AAGAATATAG GAAAAGAGAG AATAATTGAA GAGGTTAAAA AAACAGAAGA AATAATAGAA
AAGGAAGTTG GAGTAAAGAC TAATTTATTT CGATTTCCTA GTGGTTCATA TAGCCAAGAA
AGTTTAAGTG TTATTCATGG ATTACAATAT AAAAGTATAC AATGGGATGT TGATAGTGTG
GATTGGAAAG GAGAGAGTAA AGAGAGGGAA TATAAAAAGG TAATTGATAA TATAAAAGGT
GGATCAATAC TTTTATATCA TAATAATGGT AAACATACTG TAGAAAATCT TAATGAGATA
ATTCCAAAAT TAAAATCAGA AGGATATGAA TTTGTTAAAA TAAGTGACAT AATATATGAA
AATAGTTACG AAATAGATGA CAATGGAAAA CAATTGTTAA TCAAAACGAA ACAAAATAAT
AGTTGA
 
Protein sequence
MNTLKKNNNF FIFKNFFNTI ILVVIIAIFT LPINVFAKDN KPIHCVDRDD KKISLTFDVN 
WAENDYLYEI LDLLDKNNVK ATFFIMGKWV IYPEGNREKL IEIHKRGHEI GNHSYVHPDF
KNIGKERIIE EVKKTEEIIE KEVGVKTNLF RFPSGSYSQE SLSVIHGLQY KSIQWDVDSV
DWKGESKERE YKKVIDNIKG GSILLYHNNG KHTVENLNEI IPKLKSEGYE FVKISDIIYE
NSYEIDDNGK QLLIKTKQNN S