| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1815 |
|---|
| Symbol | |
|---|
| ID | 4205919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 2006280 |
|---|
| End bp | 2008007 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 642566365 |
|---|
| Product | adherence and virulence protein A |
|---|
| Protein accession | YP_699130 |
|---|
| Protein GI | 110803979 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1293] Predicted RNA-binding protein homologous to eukaryotic snRNP |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTAG ACGGTATTTA TTTATATAAC TTAATAAATG AATTAAAAGA TTCATTAATA
AATTCTAGAA TTGACAAAAT AAATCAACCT GAAAAGGATG AAATAATAAT AAATGTACGT
GGAAAGGAAA ATAAAAAACT TTTAATTTCC TCTAGTTCCA AATACCCTAG ATTACATTTT
ACTACAATAA GTAAGAATAA TCCATTACAA CCTCCTGTTT TTTGTATGGT ACTTAGAAAA
TATTTAACAG GTGGAAGAAT AATCGATATT TATCAACAAT CTACAGATAG AATTGTTTCA
ATTGATATAG CCAATAAAGA TGAAATGGGT TTTCATAGTG TATATACTTT AGTAGTAGAA
ATAATGGCTA GACACAGTAA TATTTCTCTT GTAAGGAAGA GAGATAATAA AATTATGGAA
TCAATAAAAC ATATAACAGC AAATAAAAAT AGTTTTAGAG TTCTATACCC TGGTGTAAGC
TATGTATTCC CTCCTGCATC TGAAAAATTA AATCCTTTTG ACTTTTCAAA GGAAGATTTA
AAGATAGAAT TAAGCAAAAA TAATAATGAA TTAGATGAAA AGATTTTTTC AAAGCTACTA
ACTGGTGTTG GTAAAAATCT TTCTCTTGAA ATGTATTCAT TATTTAAATC ACAATTTGGA
GATTCATATG TTTTTGATGA TATATTCAAT TTTATATGTA ATTACTTTAC TAACATATTT
AAAGATATAC AAAATATTAT ATTCTACAAG AATGAAAAAA TTATAGATTT TTATTTTAAA
GATTTATCTA TTTTAGACAA TTGTACTAAA GAAGTGTATG ATAATAGTAG TGAACTTTTA
GATGCTTTTT TTGCTAATAA AGATAAACAA GATAGATTAC ATGCAAAAAG TGCAGATATC
CAAAAATTAG TTAATACTAA TATAGACAGA TGCTTAAAAA AAATTAAGGT TCTTGAAAAA
ACCTTAGAAG AATGTTCTAA AAAAGAGGAA TTTAAGATTA AAGGTGAACT TTTAACCTCT
TATATTTATA GTATTAAAAA AGGAGATAAA TCTGTTGACC TTTTAAATTA TTATAGTGAG
GATGAAGAAT ACCTGACTAT TTCACTTGAT GAAAATAAAA CTCCATCTGA AAACATTCAA
TTTTACTTTA AAAAATATAA CAAACTAAAA AAAGCTGAAG AATCTGCCTT AGAACAACTA
GCTATAAATG AAGATGAGCT TAAATACTTA AATTCAGTTT CCTCAAGCAT ACAGGTTGCA
GATAACTATG AAGACATAGA TGCTATAAAA AATGAACTTA TAGAAACAGG CTATATAAGA
TTTAGAAGAA ATAATAATGG TAAAAAGAAA GAAAAACAAT CTAAGCCTTA TCACTATGTT
TCTTCTGATG GAATAGATAT TTATGTTGGT AAAAATAATA TCCAAAATGA TTATTTAACT
TTAAAGTTTG CTGACAAGAA TGATACTTGG CTTCACACTA AAGATATACC TGGTTCTCAC
GTAATTGTTA AAAGTTCAAA CATTCCTGAT AAAACCTTAG AAGAAGCTGC TAACTTAGCT
GTTTTCTATA GTAAAGGAAA AGGTGGCACT AAAATTCCTG TAGACTATAC TTTAGTTAAA
AATGTAAAGA AACCTTCTGG TTCTAAACCT GGAATGGTAA TCTACTCAAC TAACAAGACA
GTTTATATGG ATTCACCAAA GGAAATAACT TTAGAAAAAC TTAAGTAA
|
|---|
| Protein sequence | MALDGIYLYN LINELKDSLI NSRIDKINQP EKDEIIINVR GKENKKLLIS SSSKYPRLHF
TTISKNNPLQ PPVFCMVLRK YLTGGRIIDI YQQSTDRIVS IDIANKDEMG FHSVYTLVVE
IMARHSNISL VRKRDNKIME SIKHITANKN SFRVLYPGVS YVFPPASEKL NPFDFSKEDL
KIELSKNNNE LDEKIFSKLL TGVGKNLSLE MYSLFKSQFG DSYVFDDIFN FICNYFTNIF
KDIQNIIFYK NEKIIDFYFK DLSILDNCTK EVYDNSSELL DAFFANKDKQ DRLHAKSADI
QKLVNTNIDR CLKKIKVLEK TLEECSKKEE FKIKGELLTS YIYSIKKGDK SVDLLNYYSE
DEEYLTISLD ENKTPSENIQ FYFKKYNKLK KAEESALEQL AINEDELKYL NSVSSSIQVA
DNYEDIDAIK NELIETGYIR FRRNNNGKKK EKQSKPYHYV SSDGIDIYVG KNNIQNDYLT
LKFADKNDTW LHTKDIPGSH VIVKSSNIPD KTLEEAANLA VFYSKGKGGT KIPVDYTLVK
NVKKPSGSKP GMVIYSTNKT VYMDSPKEIT LEKLK
|
|---|
| |