| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1757 |
|---|
| Symbol | |
|---|
| ID | 4205638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1955338 |
|---|
| End bp | 1956585 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 642566307 |
|---|
| Product | recombination factor protein RarA |
|---|
| Protein accession | YP_699072 |
|---|
| Protein GI | 110803416 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00211833 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGACCTT TAGCAGATAT TATGCGTCCT AAAAAATTAG AGGATATAGT TGGACAGAAA
CACATTGTAG GAGAAGGAAC TCCTTTAAGC AATCTTATAA AAAATAAGAA CATGATAAAT
TGCATTTTTT ATGGTCCACC TGGTGTTGGA AAAACTACTT TAGCTAATAT AATTTCAAAT
TACACTGATA AGAAATTTTA TAAAATAAAT GCTACTACAT CTTCCATAAA AGAAATACAA
AGTATAACTT CTGATATAGA TAATTTGTTA AATTTTAAGG GAATAATACT GTATATAGAT
GAGCTTCAGC ATTTTAATAA AAAACAGCAG CAAGCACTTT TAGAATTTAT TGAAGATGGA
AGAGTAATAT TAATAGCAAG TACTACAGAA AATCCATACT TTGCTATACA TAAGGCTATA
CTAAGCAGAA GTACCATATT TCAATTTAAA CCAGTAAGTA CTGAAGATAT AATAATAGCT
TTAGAAAGAG CAGTAAGTAA ACTTGAAAAA GAAGGATATG TGATTTCTCT TGAAGAAGGT
GTTTTAAAGT ATATTGGAGA GATTTCTCAA GGAGATGTAA GAAAAGCTTA CACAATATTA
GAATTAGCTA TTAAATCTCA AGAAAAAGAT AATATCCTTT TAAATAAAGA GTATGTAGAA
AAATTAGGGC AATCTAATTT GAAATCTGAT TCATCAGGAG ATGATTACTA TAATTTATTA
AGTGCTCTTC AAAAAAGTAT AAGAGGAAGT GACCCTGATG CCTCAATTCA TTATTTAGCT
AGACTTATTA AGGGTGGGAA TATGGATAGC GTAATTAGGA GGATAGGAGT AATTGCAGCT
GAAGATATAG GGCTTGCTCA TCCTAATGCT TTGCAAGTTG TAAATAGCGG AATAGACCTT
GCTTTGAAAA TAGGAATGCC AGAAGCAAGG ATAATATTAT CTGAATTAGT AATATATTTA
GCTACCTTAC CTAAGTCAAA TAGTGCGTAT ATGGCTATTG ATGATGCTTT AAGAGATTTA
GAAAGAAATA ATTCGGGAGA TGTGCCAAAA CATTTAAAAG ATGCTCATTA TAGTGGAGCA
AGCAATTTAG GTGTTGGTGG GTATTTATAT CCACATAATT ATCCTAATAG TTATATAAAT
CAAGAATATA TGCCTGAAAA TATGAGAGGA AAAGAATATT ATAAGCCTAA GGATAATAAA
TACGAAAGTA GCATAAAAGC CTACTGGAAT AATGTAAAAA ACAAATAG
|
|---|
| Protein sequence | MRPLADIMRP KKLEDIVGQK HIVGEGTPLS NLIKNKNMIN CIFYGPPGVG KTTLANIISN
YTDKKFYKIN ATTSSIKEIQ SITSDIDNLL NFKGIILYID ELQHFNKKQQ QALLEFIEDG
RVILIASTTE NPYFAIHKAI LSRSTIFQFK PVSTEDIIIA LERAVSKLEK EGYVISLEEG
VLKYIGEISQ GDVRKAYTIL ELAIKSQEKD NILLNKEYVE KLGQSNLKSD SSGDDYYNLL
SALQKSIRGS DPDASIHYLA RLIKGGNMDS VIRRIGVIAA EDIGLAHPNA LQVVNSGIDL
ALKIGMPEAR IILSELVIYL ATLPKSNSAY MAIDDALRDL ERNNSGDVPK HLKDAHYSGA
SNLGVGGYLY PHNYPNSYIN QEYMPENMRG KEYYKPKDNK YESSIKAYWN NVKNK
|
|---|
| |