| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1674 |
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| Symbol | topA |
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| ID | 4206445 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1869794 |
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| End bp | 1871896 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 642566224 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_698989 |
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| Protein GI | 110801774 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial
[TIGR01057] DNA topoisomerase I, archaeal |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.121954 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTCAAA AATTAGTAAT TGTTGAGTCA CCAGCTAAAG CCAAGACAAT AGAAAAATAT
TTAGGTAAAA ATTATGTAGT CGAAGCTTCA ATGGGACATG TAAGAGATTT GCCAAAAAGC
CAATTAGGCG TTGATATAGA AAATGACTAT AATCCTAAAT ATATAACAAT AAGAGGAAAA
GGTGAACTTT TAAGCAAACT TAGAAAGTTA GCTAAAAAAA GTGATAAGAT ATACCTTGCA
ACTGACCCTG ATAGAGAAGG GGAAGCTATA TCTTGGCACT TAGCTAATGT GCTTAAGATA
GATGAAAACG AGAATTGTAG AATAGAATTT AATGAAATAA CAAAGGATGC AGTTAAAAAT
TCAATAAAGC ATCCAAGAAA AATAAATTGT AATTTAGTAG ATGCTCAGCA AGCAAGAAGA
GTGTTAGACA GATTGGTTGG ATATGAAATA AGTCCACTCC TATGGAGGAA TGTAAAATGG
GGATTGAGTG CTGGAAGGGT TCAGTCAGCA GCATTAAAAC TTATATGTGA TAGAGAAGAA
GAAATAAAGA AGTTCAATCC AGAGGAGTAT TGGACTGTTG ATGTTAAACT TAAAAAAGGA
AAGAAGTCTT TTCCTGTTAA GTTAACAACT AAAAATAAGA AAAAGATAGA AATAAAAAAT
AAAGAACAAG CAGATCAAAT AATAGATGAA CTTAAAGAAA ATGAATATAT AGTAAGCAAG
ATAAAAAAAG GAACTAAGAA TAAAAATCCT TTAGCTCCAT TTACTACAAG TACTCTTCAA
CAAGAGGCAA GTAAAAAGCT TAACTTTATG ACAAAGAAAA CAATGTCAGT AGCTCAACAA
CTTTATGAAG GGGTTGAAGT TAAGAAATTT GGAACTGTGG GTTTAATAAC TTATATGAGA
ACTGATTCTG TTAGAATCTC AAAGGAAGCT CAAGAAAAAG CTCTTAACTT TATAGATGAA
ACATATGGAA AAGAGTATGT TCCAGAGGAG CCAAGAGTAT ATAAAGGAAA GAAAAATATA
CAAGATGCCC ATGAAGCTAT AAGACCTACA TATGTTGAAA TAACACCAGA GATTGCTAAG
ACAAACTTAA GTAATGATCA ATATAAGTTA TATGCTTTAA TATGGAAAAG ATTCATAGCA
AGCCAAATGG CTACATGTAT ATTAAATACT AATAGTTTAG AGATTAAAAA TGGTGATTAT
ACATTAAGAG CTAGTGGATC TACCATAAAA TTTGATGGTT TCATGAAAGT TTATGAGTAT
ATATCAGGAG AAGAGGAAGA ATCAGTACTT TTACCTGAAT TAGAAGAAAA TGAAGTTTTA
AAAGAAGAAT CAATTGAAGG TAAACAACAT TTTACTCAAC CACCTGCTAG ATATTCAGAG
GCTGCTTTTG TTAAGCTTTT AGAGGAAAAA GGTATTGGAA GACCAAGTAC TTACGTTCCA
ACAATATCTA CATTAATAAG TAGAAAATAT GTAGATAGAG AGAAAAAGAT TCTTATACCA
ACAGAATTAG GATTTATAGT AAATGATATA CTTTCAAATT ATTTTAAGCA GATAGTTGAT
ACTGACTTTA CTGCAGAAAT GGAAGTTAAG CTTGATAATG TTGAAGCTGG AAAAGAAAGT
TGGACTCATA TAGTAGATGA ATTCTTTACT CCATTAAAAG AAGATATAGA AAAGGCAGAA
AAAGAGATAT CTAAGGTTAT TATAGAAGAT AAAGTCAGTT ATGTACCTTG TGATAAATGT
GGAAGACTTA TGGTTATTAA GCATGGAAGA TTTGGAGATT TCTTAGCTTG CCCTGGATAT
CCAGAGTGTC AAAACACAAA ACCTATAGTT GAAGAGGTTG ATGCAAACTG TCCATTATGT
GGAGGAAAGA TTTTAGTTAA GAGAAGTAAA AAGGGAAACA GATTCTATGG ATGTAGTAAT
TATCCAGAGT GTAATTTCGT AAGTTGGTAT GAGCCAACAA ATGAAAAATG TCCAGAATGT
AGTTCATATA TGGTTAAGAG ATACTCTAAG AGTAAAGGTG AATATTTACA GTGTAGCGAT
AAAGAATGTA AATATGAAAA AATAATTGAA AAAAATAATG ATGAAAATAA CTCAGAAAAG
TAG
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| Protein sequence | MGQKLVIVES PAKAKTIEKY LGKNYVVEAS MGHVRDLPKS QLGVDIENDY NPKYITIRGK
GELLSKLRKL AKKSDKIYLA TDPDREGEAI SWHLANVLKI DENENCRIEF NEITKDAVKN
SIKHPRKINC NLVDAQQARR VLDRLVGYEI SPLLWRNVKW GLSAGRVQSA ALKLICDREE
EIKKFNPEEY WTVDVKLKKG KKSFPVKLTT KNKKKIEIKN KEQADQIIDE LKENEYIVSK
IKKGTKNKNP LAPFTTSTLQ QEASKKLNFM TKKTMSVAQQ LYEGVEVKKF GTVGLITYMR
TDSVRISKEA QEKALNFIDE TYGKEYVPEE PRVYKGKKNI QDAHEAIRPT YVEITPEIAK
TNLSNDQYKL YALIWKRFIA SQMATCILNT NSLEIKNGDY TLRASGSTIK FDGFMKVYEY
ISGEEEESVL LPELEENEVL KEESIEGKQH FTQPPARYSE AAFVKLLEEK GIGRPSTYVP
TISTLISRKY VDREKKILIP TELGFIVNDI LSNYFKQIVD TDFTAEMEVK LDNVEAGKES
WTHIVDEFFT PLKEDIEKAE KEISKVIIED KVSYVPCDKC GRLMVIKHGR FGDFLACPGY
PECQNTKPIV EEVDANCPLC GGKILVKRSK KGNRFYGCSN YPECNFVSWY EPTNEKCPEC
SSYMVKRYSK SKGEYLQCSD KECKYEKIIE KNNDENNSEK
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