Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1601 |
Symbol | rbsA |
ID | 4205167 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 1792231 |
End bp | 1793736 |
Gene Length | 1506 bp |
Protein Length | 501 aa |
Translation table | 11 |
GC content | 30% |
IMG OID | 642566152 |
Product | ribose transport ATP-binding protein rbsA |
Protein accession | YP_698917 |
Protein GI | 110802039 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0126293 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTGAAA GAACACCAAT GCTAAAAATG GTAGGTGTAT CAAAATCCTT TCCAGGAGTC AAAGCTTTAG ATAATGTTAG CTTAATGGCT TATGGTGGAG AAGTTACTGC TTTAATGGGA GAAAATGGAG CAGGAAAATC AACTTTAATG AAAATACTAA GTGGAGTATA TAAAAAAGAT GAAGGTAAAA TATTCATTGA AGGAAGGGAA GTAGAAGTAA AGGGAATTAA ATCAGCAGAA GAAGCTGGTA TAACAATAAT TCACCAAGAA CTTAGTGTTT TAAATAACTT AACTGTTTCA GAAAATATAT TTTTAGGTAA TGAAAAACAT AGTAAATTTA CAGGAAGAAT AAATAAAAAG TTATTAGATG AAAGAAGTAA AATGTTCTTA GAACAAATTG GTTGTGATAT AGATCCAAAT AGATTAGTTA GTACTCTTAA TGTAGGTGAA AAGCAAATGA TAGAAATAGC AAAAGCCTTA ACTAAGAATG CTAGAATAAT TATTATGGAC GAGCCTACTA CAGCCTTAAC TGATGTAGAG ACTGAAAACC TTTTTAAAGT AATAGAGAAT TTAAGAAAAA AGGGAATAGC AATAATATAC ATATCACATA GAATGGAAGA AATATTTAAA ATATGTCATA GAGTAGAAGT ATTAAGAGAT GGTAAATATA CAGGAAGTGC AGAAATAAAA GACATAGATA ATGATAAGCT TATAGCAATG ATGGTTGGAA GAACCATAGA GGATCAATTT CCATACAGAG ATGTTAAAAA AGGAGATTTA GCTTTAGAAG TTAAAAATCT TAGCTGTAAG GAAGGAGTTA AAGGAGCTTC ATTTACTCTT AGAAAGGGAG AAATATTAGG AATTGCAGGT CTTATGGGAT CTGGCAGAAC AGAGCTTGCA AAAACAATAT TTGGAGAATA TAAAAAAACA AGTGGTGAAA TTTCTTTAAA TGGAAGTCTT ATTAATATAA ATTGCATAAG TGATGCCATA AATAATGGTA TATGTTATCT TTCAGAGGAT AGAAAAAAAG AGGGCTGTAT TTTAGGAATG TCTGTTGGAG AAAATATGAC CTTATGTAAC TTAAAGAAAT ATGAAAATAA GTTTAAATCT CTTGATAAAA AAGAAGAAGC AAAGGATATA GAGTACTATA TTAAGAAGAT AAACATAAAA ACTCCAAATA AGGAACAATT TATTAAGAAT TTAAGTGGAG GTAATCAACA GAAGGTTATA CTTGCTAAAT GGCTTATGCT ATCTCCAGAA GTATTAATAA TTGACGAGCC AACTAGAGGA ATAGACGTAG GTGCAAAAAA AGAAATTTAT GAACTTTTAA ATGAACTTAA AGCTAGTGGA AAAGCCATAA TAATGATTTC TTCAGACTTA CCAGAGGTTT TAGGAATTAG TGATAGAATT ATGGTTATGA GTGAAGGAAG AATCTCTGGG GAATTAAATA GAGATGAAGC AAATCAAGAA AGTATAATGA AATTAGCCGT TGGAATAAAC AATTAG
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Protein sequence | MGERTPMLKM VGVSKSFPGV KALDNVSLMA YGGEVTALMG ENGAGKSTLM KILSGVYKKD EGKIFIEGRE VEVKGIKSAE EAGITIIHQE LSVLNNLTVS ENIFLGNEKH SKFTGRINKK LLDERSKMFL EQIGCDIDPN RLVSTLNVGE KQMIEIAKAL TKNARIIIMD EPTTALTDVE TENLFKVIEN LRKKGIAIIY ISHRMEEIFK ICHRVEVLRD GKYTGSAEIK DIDNDKLIAM MVGRTIEDQF PYRDVKKGDL ALEVKNLSCK EGVKGASFTL RKGEILGIAG LMGSGRTELA KTIFGEYKKT SGEISLNGSL ININCISDAI NNGICYLSED RKKEGCILGM SVGENMTLCN LKKYENKFKS LDKKEEAKDI EYYIKKINIK TPNKEQFIKN LSGGNQQKVI LAKWLMLSPE VLIIDEPTRG IDVGAKKEIY ELLNELKASG KAIIMISSDL PEVLGISDRI MVMSEGRISG ELNRDEANQE SIMKLAVGIN N
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