Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1481 |
Symbol | virS |
ID | 4204855 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 1656114 |
End bp | 1657439 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 21% |
IMG OID | 642566035 |
Product | sensor histidine kinase VirS |
Protein accession | YP_698800 |
Protein GI | 110802912 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2972] Predicted signal transduction protein with a C-terminal ATPase domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000161061 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAATGA ATCGAATATT TTGGGATTTT ATGGAAAACA CTTCCATGAT TATAGAATGG ATAAGTTTTT ATTTAATTAT AAGTCAATTT AGCACTAAGA AAAGAAAAAA TAAACAAGAA ATTTATTCTT TCATTGTAGT AATAATTTTT TCTAGCTTGT TAAAAGTTCT AAATGTATAT CCAAATGAAA GAATAGTAAT ATGTTTTTTT ATAGGTTTAG TATATTATAA ATTTAATTTT AAAGTAAACA ATATAAAATC TATTATGATT TCATTGATAT TTTGGTTATT TATGCTTACA ATAGAAGCCT TATCTATTTC TTTTATAGTA AAAATAAATA GTTTAGTTAG TGTATCGGAG CTTTTAGGTA AAAATATCTA TAGAGCGGAA ACTATGATAT TATCAAAGGT TATTTTAATA TCTTTAATAA TGGTTGTTAG ATGTTTAAAG TTTCGTGTAG ATATTGGAAA GGGAGATTTT ATTTATATTC TTACTCCTAT AGCTACTAAT ATAATTATTA TTTTAGTTAT ATTTGGATAT GCTTTTAAAA GTGGACGAGA AGGCTTAGGA GATAATGTAT CCATATTTTT TGTTTCAATA TTATTATTAT TATTATCTAA TATGTCTTTG ATGTTTATTG TTAGTAAAAT AATAAAAAAT AACAAATTAA AATTAGAAAA TGAATTTATA AAGGATAAGT TAGAAATGGA ATATAAATAT TATTCTAATT TAAAAGACAA CCAAGAAAAA GTAAAAAGGC TTTATCATGA TATTAAAAAT CACATAGCTT GTATTGAAGG AAATAACAAA GAAAACAGTA TAAGAAAAAA ATATATAGAT AGTCTTAATT TAGAAATAGA CAAGTTAAAC TTAGGATTTA ATACTGGAAA TGAAGTGTTA GATGTAATAC TAAATAATAA AAAAGAAAAA TGTGTGGAAA ATAATATTTC TTTAAAGGTT TTTATGGATT TTTCAAAGGT TAATTTTATT GAGTACTTTG ATATATGCAC AATTTTCTCT AATTGCATTG ATAATGCAAT TGAAGCTTGC AAAAAGATTA AAGATAATAA CAGATACATA AGTTTAAAAG GTAATTGTGT AAATAATTTT TATGTTGTTA AAATCGAGAA TTCTAAAATA AATAAAATAA AAAAGTTAAA TGGAGATTTT TTAACCGATA AAAAAGATAA GTTTTTACAT GGTATTGGCC TTAAAAATAT AAGACTAGCT TTAGAAAAAT ATAATGGAGA AATAATTATA GAACCTTTAG ATGACAAATT TATATTAAAA ATGTTAATTC CTATAAATCA AGAAAAAGAA GCCTAG
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Protein sequence | MLMNRIFWDF MENTSMIIEW ISFYLIISQF STKKRKNKQE IYSFIVVIIF SSLLKVLNVY PNERIVICFF IGLVYYKFNF KVNNIKSIMI SLIFWLFMLT IEALSISFIV KINSLVSVSE LLGKNIYRAE TMILSKVILI SLIMVVRCLK FRVDIGKGDF IYILTPIATN IIIILVIFGY AFKSGREGLG DNVSIFFVSI LLLLLSNMSL MFIVSKIIKN NKLKLENEFI KDKLEMEYKY YSNLKDNQEK VKRLYHDIKN HIACIEGNNK ENSIRKKYID SLNLEIDKLN LGFNTGNEVL DVILNNKKEK CVENNISLKV FMDFSKVNFI EYFDICTIFS NCIDNAIEAC KKIKDNNRYI SLKGNCVNNF YVVKIENSKI NKIKKLNGDF LTDKKDKFLH GIGLKNIRLA LEKYNGEIII EPLDDKFILK MLIPINQEKE A
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