Gene CPR_1481 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPR_1481 
SymbolvirS 
ID4204855 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens SM101 
KingdomBacteria 
Replicon accessionNC_008262 
Strand
Start bp1656114 
End bp1657439 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content21% 
IMG OID642566035 
Productsensor histidine kinase VirS 
Protein accessionYP_698800 
Protein GI110802912 
COG category[T] Signal transduction mechanisms 
COG ID[COG2972] Predicted signal transduction protein with a C-terminal ATPase domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.61061e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAATGA ATCGAATATT TTGGGATTTT ATGGAAAACA CTTCCATGAT TATAGAATGG 
ATAAGTTTTT ATTTAATTAT AAGTCAATTT AGCACTAAGA AAAGAAAAAA TAAACAAGAA
ATTTATTCTT TCATTGTAGT AATAATTTTT TCTAGCTTGT TAAAAGTTCT AAATGTATAT
CCAAATGAAA GAATAGTAAT ATGTTTTTTT ATAGGTTTAG TATATTATAA ATTTAATTTT
AAAGTAAACA ATATAAAATC TATTATGATT TCATTGATAT TTTGGTTATT TATGCTTACA
ATAGAAGCCT TATCTATTTC TTTTATAGTA AAAATAAATA GTTTAGTTAG TGTATCGGAG
CTTTTAGGTA AAAATATCTA TAGAGCGGAA ACTATGATAT TATCAAAGGT TATTTTAATA
TCTTTAATAA TGGTTGTTAG ATGTTTAAAG TTTCGTGTAG ATATTGGAAA GGGAGATTTT
ATTTATATTC TTACTCCTAT AGCTACTAAT ATAATTATTA TTTTAGTTAT ATTTGGATAT
GCTTTTAAAA GTGGACGAGA AGGCTTAGGA GATAATGTAT CCATATTTTT TGTTTCAATA
TTATTATTAT TATTATCTAA TATGTCTTTG ATGTTTATTG TTAGTAAAAT AATAAAAAAT
AACAAATTAA AATTAGAAAA TGAATTTATA AAGGATAAGT TAGAAATGGA ATATAAATAT
TATTCTAATT TAAAAGACAA CCAAGAAAAA GTAAAAAGGC TTTATCATGA TATTAAAAAT
CACATAGCTT GTATTGAAGG AAATAACAAA GAAAACAGTA TAAGAAAAAA ATATATAGAT
AGTCTTAATT TAGAAATAGA CAAGTTAAAC TTAGGATTTA ATACTGGAAA TGAAGTGTTA
GATGTAATAC TAAATAATAA AAAAGAAAAA TGTGTGGAAA ATAATATTTC TTTAAAGGTT
TTTATGGATT TTTCAAAGGT TAATTTTATT GAGTACTTTG ATATATGCAC AATTTTCTCT
AATTGCATTG ATAATGCAAT TGAAGCTTGC AAAAAGATTA AAGATAATAA CAGATACATA
AGTTTAAAAG GTAATTGTGT AAATAATTTT TATGTTGTTA AAATCGAGAA TTCTAAAATA
AATAAAATAA AAAAGTTAAA TGGAGATTTT TTAACCGATA AAAAAGATAA GTTTTTACAT
GGTATTGGCC TTAAAAATAT AAGACTAGCT TTAGAAAAAT ATAATGGAGA AATAATTATA
GAACCTTTAG ATGACAAATT TATATTAAAA ATGTTAATTC CTATAAATCA AGAAAAAGAA
GCCTAG
 
Protein sequence
MLMNRIFWDF MENTSMIIEW ISFYLIISQF STKKRKNKQE IYSFIVVIIF SSLLKVLNVY 
PNERIVICFF IGLVYYKFNF KVNNIKSIMI SLIFWLFMLT IEALSISFIV KINSLVSVSE
LLGKNIYRAE TMILSKVILI SLIMVVRCLK FRVDIGKGDF IYILTPIATN IIIILVIFGY
AFKSGREGLG DNVSIFFVSI LLLLLSNMSL MFIVSKIIKN NKLKLENEFI KDKLEMEYKY
YSNLKDNQEK VKRLYHDIKN HIACIEGNNK ENSIRKKYID SLNLEIDKLN LGFNTGNEVL
DVILNNKKEK CVENNISLKV FMDFSKVNFI EYFDICTIFS NCIDNAIEAC KKIKDNNRYI
SLKGNCVNNF YVVKIENSKI NKIKKLNGDF LTDKKDKFLH GIGLKNIRLA LEKYNGEIII
EPLDDKFILK MLIPINQEKE A