| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1438 |
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| Symbol | |
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| ID | 4204270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1618370 |
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| End bp | 1619398 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 642565992 |
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| Product | rhomboid family protein |
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| Protein accession | YP_698757 |
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| Protein GI | 110803398 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAT TTGAGCAAGA TTATTTCAAC TTACTTATAA ATAATTATGG TTTTTATGTA
GAAGACTTAA AAGGAGAACA GGATAAAGAA CTATGGATAG CTTTAAAGAC AGTTAAAGAT
GATGGAAAAT ATGCAGTTAT AATATCTAAG TCTTATGAAG AGGAAGAAAA TTTAAAAATT
GCAGAAGATT ATTTAAAAAG CTTAGGTAAG TCATATTCTC TTCATAATAT AATTCTTTAT
AAAAGCTATG ATAGGGATGA AAAAAAGGAT GAAGACTTTT CTATAGATGA GAATTGTCAT
AGAGTAATTG TTGATGTTCA GAAAAGAGAA GTTTTAAAAA GTGATAGGAG CTCTGAGCCT
CTAGCAAAAA TACTAGAATT TCTATTAAAA AAGAAAGAAG AACCAAAGGT TCCTTGGTAT
AAAAAATTAA GATGTGGAAA AGTTACAGGA ATATTGATTG GTTTAAATAT TTTAGCTTTT
CTAGTTTGTC TTATTGTAGC TACTGCTTTA GGTGCTGGAT TCTTCAGAAA TATAGTAGAG
ATGAATCCCA AAATTCTATA TTGGATGGGT GCTAAGCATA ATAATGCAAT AATATTTCAT
GGAGAATATT ATAGATTAGT AACCTCTATG TTTTTGCATA GTGGAATAGT ACATCTTTTA
TTTAATATGT ATGCTCTCTA TATATTAGGA GATTTCATAG AAAGGATTTA TGGAGCGAAA
AAATATTTAG TTATCTATTT TGTTTCAGGA ATAGTAGCAA GTATATTTAG CTTATACTTT
TCACCAGTTA TGGGAGTTGG CGCTTCAGGA GCTATATTTG GACTTTTAGG GGCAGCTTTA
GTTTTTGCTT ATAATGAAAA AGATAGAATT GGTAAAGCTT TAGTAACTAA TATAATAGTT
ATTATATTGC TTAATGTATT TATCGGTCTA TCAATGTCTA ATATAGATAT ATCTGCTCAT
TTTGGCGGAT TTATAGCAGG AGCTATTTTA GGACTTTTCT TCCATAATTA TAAAATAATA
AGAAAATAA
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| Protein sequence | MSKFEQDYFN LLINNYGFYV EDLKGEQDKE LWIALKTVKD DGKYAVIISK SYEEEENLKI
AEDYLKSLGK SYSLHNIILY KSYDRDEKKD EDFSIDENCH RVIVDVQKRE VLKSDRSSEP
LAKILEFLLK KKEEPKVPWY KKLRCGKVTG ILIGLNILAF LVCLIVATAL GAGFFRNIVE
MNPKILYWMG AKHNNAIIFH GEYYRLVTSM FLHSGIVHLL FNMYALYILG DFIERIYGAK
KYLVIYFVSG IVASIFSLYF SPVMGVGASG AIFGLLGAAL VFAYNEKDRI GKALVTNIIV
IILLNVFIGL SMSNIDISAH FGGFIAGAIL GLFFHNYKII RK
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