| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1292 |
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| Symbol | rnr |
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| ID | 4206098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1459717 |
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| End bp | 1461972 |
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| Gene Length | 2256 bp |
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| Protein Length | 751 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 642565848 |
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| Product | ribonuclease R |
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| Protein accession | YP_698614 |
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| Protein GI | 110803809 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000149292 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATAA AAGATATAAT TTTAGGGTTT ATGAAAGAAG AAGCATACAG ACCAATGACA
ATGTTAGAAT TATCAAAGAT ATTTAACATA AATAAAGCTG AATATAAACA ATTTAAAAAA
GTCTTTAAGG CCTTAGAAGC AGAGGGTTTA ATAGCTAGAG ATGAGGAAGA CAGATTTGGC
TTAATAGATA AAGTGGGGTT AATACCTGGA AAAATTCAAA TACATCAAAA TGGATTTGGT
TTCTTAATAC CAGATGAAGA AGGTGTAACT GATGTATTTA TACCTAAGAA TGCTTTAAAT
GAGGCTATGA ACGGAGATAG AGTATTAGGT AAGGTTGTAA AAGAAAGCCA AGAAGGAAAA
AGACGTGAAG GTGAAATAGT AAGAATAACT GAGAGAGTTA ATACAAAGAT AATAGGAATA
TATGAAGATA ATAAGAGTTT TGGATTTGTA CTTCCACAGG ATCAAAGAAT TCAAAATGAT
ATATTCATAT CTAAGAAGGA TAGAAATGGA GCTAAAAAAG GTAATGTAGT TGTTGTTGAA
ATAACTAAGT GGCCAGATGG TAGAAGAAAG AATCCAGAAG GAGTAGTAGT AGAAATACTA
GGAAACAGAG GAGATTTAGG CCTAGATATT ATAACTGTAA TTAAGAAATA TGCTCTTCCA
GAAGAATTCC CTCCACAAGT TTTAGCCTTT GCAGAAGAAA TTTCAGAGGA AATCCCAGAG
TCAGAAATTA AGAGAAGAAC AGACTTAAGA GATGTAAAAA TGGTTACTAT AGATGGTGAA
GATGCTAAGG ATTTAGATGA TGCTGTATCT ATAGAAAGAC TTCCAAATGG AAACTATAAA
TTAGGAGTTC ACATTGCAGA TGTAACTCAC TATGTAAAAG AAAATAATCC TTTAGATAAA
GAGGCCTTTA AAAGAGCTAC TTCTGTTTAC TTAGTTGATA GAGTTATTCC TATGCTTCCT
AAAAAGTTAT CAAATGGAAT ATGTTCATTA AATCCACAGG TAGACAGACT TGCTTTAACT
TGTTTTATGG AAATAGATCA TAAAGGAAAT GTGGTTAACT ATTCAATACA TGAAAGTGTA
ATTAAAACTA ATGAGAGAAT GACATACACT GATGTAACTA AGATTTTAAG AGATAATGAC
AAAGAGTTAA TTGAAAGATA TAAGGATTTA GTAGATGACT TTAAGGCAAT GGAAGAGTTA
TGCAAAATCT TAAATAAGAG AAGAATGGGG AGAGGAGCTA TTGACTTTGA ATTTGCAGAG
AGCAAAATAA TCTTAGATGA AAAAGGAAAG CCAATAGATA TAAAACCATA TGAAAGAGCT
ATAGCAAACA GAATCATAGA AGAATTTATG CTAGTATGTA ATGAAACTAT AGCAGAATAT
ATGAATAAGG CTGAAATCCC TTTTGTATAT AGAATACATG AGGAGCCAGA TAATGAAAAA
CTTCAAAGAT TTAAAAATTT TGCATATAGC TTAGGATATT TATTTAACTT TGGAGAACTT
ATTGAGCCTA GAGATTTACA AAAGGTTGTT GAAGAAGTTA AGGGCAAAAA TGAAGAGATG
GTAATAAATA CATTGCTTTT AAGAAGTATG ATGCAAGCTA GATATTCACC AGACTGTGCA
GGTCACTTTG GATTAGCAGC TGAATACTAC TGTCACTTTA CTTCACCAAT TAGAAGATAT
CCAGACTTAC AAATTCATAG AATAATAAAA GAATATATAA ATAAGAAGAT TGATCCTAAG
AGAGCTAAGA GACTTTTAAG TATTGTTGAC TCTGCATCTA AACAATCTTC AGAAATGGAA
AGAATAGCTC AAGAAGCTGA AAGAGAAACA AATGATCTTA AGAAGGCTGA ATATATGAAA
GATAGAATTG GAGAAATATT TGATGGTATT ATTTCTTCAG TTACTGGATT TGGAGCCTTT
GTTGAACTTC CAAATACTGT AGAAGGTCTT GTTCATGTAA CAAGCTTTAG AGATGATTAT
TACATCTATG ATGAGGAAAA CCTTCAATTA ATAGGTGAAA GAACTAAGAA GGTTTATAAA
CTTGGAGAAA AGGTTAAGGT TCTTTGCTCA AGAGTAGAAA TGGATACTAG AGAAGTTTAT
TTTGAAATAG TTGAGGATAA GTACACTATT GAGGAAAAGG AAGCTGAAAC TGAAGAGAGA
GAGAATTTAC TTGATGAAGT AAAAAAAGAG CTTGAAGCAG AGGGAAAGGT TGAAATAATA
GAGCCAAGAG AAGAAACTGC TGAGGAAGAG CTTTAA
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| Protein sequence | MKIKDIILGF MKEEAYRPMT MLELSKIFNI NKAEYKQFKK VFKALEAEGL IARDEEDRFG
LIDKVGLIPG KIQIHQNGFG FLIPDEEGVT DVFIPKNALN EAMNGDRVLG KVVKESQEGK
RREGEIVRIT ERVNTKIIGI YEDNKSFGFV LPQDQRIQND IFISKKDRNG AKKGNVVVVE
ITKWPDGRRK NPEGVVVEIL GNRGDLGLDI ITVIKKYALP EEFPPQVLAF AEEISEEIPE
SEIKRRTDLR DVKMVTIDGE DAKDLDDAVS IERLPNGNYK LGVHIADVTH YVKENNPLDK
EAFKRATSVY LVDRVIPMLP KKLSNGICSL NPQVDRLALT CFMEIDHKGN VVNYSIHESV
IKTNERMTYT DVTKILRDND KELIERYKDL VDDFKAMEEL CKILNKRRMG RGAIDFEFAE
SKIILDEKGK PIDIKPYERA IANRIIEEFM LVCNETIAEY MNKAEIPFVY RIHEEPDNEK
LQRFKNFAYS LGYLFNFGEL IEPRDLQKVV EEVKGKNEEM VINTLLLRSM MQARYSPDCA
GHFGLAAEYY CHFTSPIRRY PDLQIHRIIK EYINKKIDPK RAKRLLSIVD SASKQSSEME
RIAQEAERET NDLKKAEYMK DRIGEIFDGI ISSVTGFGAF VELPNTVEGL VHVTSFRDDY
YIYDEENLQL IGERTKKVYK LGEKVKVLCS RVEMDTREVY FEIVEDKYTI EEKEAETEER
ENLLDEVKKE LEAEGKVEII EPREETAEEE L
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