Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1082 |
Symbol | |
ID | 4204110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 1227583 |
End bp | 1229799 |
Gene Length | 2217 bp |
Protein Length | 738 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 642565638 |
Product | bacteriocin ABC transporter, ATP-binding/permease protein, putative |
Protein accession | YP_698404 |
Protein GI | 110801693 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | [TIGR01193] ABC-type bacteriocin transporter [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.706831 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTATATTA ATAGGTATAA GTGTATAAAA CAACATGACT ATAAGGATTG TGGATGTGCA TGTTTAGCTA CTATATGTAA GCAATATGGA TTAAAATTTC CAATATCTAA AATTAGAGAA GTAGCTGGAA CAGATAAAGA GGGTACAAGT GCTTTAGGCG TTATACAGGC TGCTGAAAAA CTTGGATTTT CATCTAAAGG AGTTAAAGCT AATAAACCCG AAGATATATT TGGAGAAATT CCACTTCCAG CTATAGCTCA TGTTGTTATA GACAAGACAA TGCTACATTA TGTAGTTATA CATAAAATTA GTAAAAAAGA AATTATAGTT GCTGATCCAG CTAAAGGAAT AGTTAAATAT AAACCTAGTG ACTTCTTTAA TATTTGGACA GGAATCCTTT TAATAATGAC GCCGACCGCT GAATTTAAAA AAGGAAATGA AGTTAAAGGA GTATTCACTA GGTTTTTTGA ACTATTAAAG CCACAAAAAG GATTACTTTT TAACATATTT CTAGCTTCAC TTCTTATAAC GGCATTTGGA ATAATAGGGT CCTTTTATTT TAAATTTTTG TTGGATGACA TAGTACCTAA TAATTTAAGA CAATCATTAA CTATATTTTC TATAGGATTT ATACTTTTAG CAATATTTAA GGTTATTACA GAAGCTTTTA GAACACAACT TCTTATTCAT TTAGGACAAC GTTTAGATAT ACCATTAATG TTAGGTTATT ATGATCATGT AGTTAATCTT CCTATGAATT TCTTTGGTAC AAGAGAAATT GGAGAGATTA TATCAAGATT TAATGATGCA TCAAAGATAA GACAGGCTAT ATCAGGGGTT GCTCTTACTA TGATGATTGA TGTGATTTTG GTTATAGTCG GAGGCGGAAT TCTTTATTAT CAAAGTTCAT TACTATTTGG AATAACTATA TTCCCTTTAA TTTTATACGG AATAATTGTT TTTGTATTTA AGAGTAATAT AGAAAAAGTT AATAGAGAAA CTATGGAAGG TAATGCTAAG TTAACATCAT ATTTAGTAGA ATCTTTAAAT GGAATAGAAA CTATAAAAGC TTTTAATGCA GAAAGAGAAG TAAATTTAGA AACCGAAAAA AGATTTATAA AGTTTATAAA AGCTATATTT AAAAATGAGT ACATAAATAA TATTCAAGTA TCTTTAAAAA GCTTGGTAAA AGGAGTTTTT GCTATAGTTA TTCTATGGAT TGGTACTGTT CAAGTTTTAA ATGGAAAGAT TTCCTTTGGT GAACTTTTAA CTTTTAATGC TCTACTAGCA TATTTCTTAA GTCCAGTAGA AAATATAATA AATCTACAAC CAACACTTCA AACGGCAGTT GTAGCAGCGG AAAGATTAAG TGAAATATTA GATTTAGAAC TTGAAAAGTC TGAGGAAGAA TATAAAAAGA TTATCCCTCA ATCCTTAAAA GGAAAAATAG AGTTTAAAAA TGTTGACTTT AGATATGGGA CTAGACAACT TATTTTAAAA AATATAAATA TGACTATTAA TAAAGGTGAA AGAATTGCAC TAGTTGGAGA AAGTGGATCA GGTAAAACAA CATTAGCTAA GTTATTACTT AATTTTTACC AATGTGAAAA GGGTGAAATT ATAGTAAATG ATTATAATTT ATTAGATATT AATGTTGAAG CTCTTAGAGA TAAGATAGCA TATATTTCTC AAGAAACATT TTTATTTAAT GGAACTATAA TAGAAAACTT AATGCTTGGA AATCCTTATT TAACGTATGA AGAGATTATT GAAGCTTGTA AAAAGGCTCA AATACATGAT TTTATAAATT CATTACCATT AAGGTATAAC ACATTAGTTG AAGAAAATGG ATCAAATTTC TCCGGAGGAC AAAAGCAAAG ATTATCTATT GCAAGAGCAA TACTTAGAAA ACCAGAGATT CTTATAATGG ATGAAGCTAC AAGTAATCTT GATTCTATAA CTGAAAAAGC TATCGAAAAA ACCATCCATG AATTTAGTGA AGGTATGACG ACTATAATAA TAGCTCATAG ATTAAGCACT ATTAAAAGGT GTGATAATAT CTACATTTTA GAAAAGGGAG AAATAAAAGA ACAAGGCAAT CATAAAGAAT TATTAAATAA AAAGGGTAGA TATTATAAGC TATGGAAAGA ACAACTTCCA GAAGTAGATA ACATTGAAGA AGTTCAAGTT AAGGAGGTTG TTGAAGTTGA AATTTAA
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Protein sequence | MYINRYKCIK QHDYKDCGCA CLATICKQYG LKFPISKIRE VAGTDKEGTS ALGVIQAAEK LGFSSKGVKA NKPEDIFGEI PLPAIAHVVI DKTMLHYVVI HKISKKEIIV ADPAKGIVKY KPSDFFNIWT GILLIMTPTA EFKKGNEVKG VFTRFFELLK PQKGLLFNIF LASLLITAFG IIGSFYFKFL LDDIVPNNLR QSLTIFSIGF ILLAIFKVIT EAFRTQLLIH LGQRLDIPLM LGYYDHVVNL PMNFFGTREI GEIISRFNDA SKIRQAISGV ALTMMIDVIL VIVGGGILYY QSSLLFGITI FPLILYGIIV FVFKSNIEKV NRETMEGNAK LTSYLVESLN GIETIKAFNA EREVNLETEK RFIKFIKAIF KNEYINNIQV SLKSLVKGVF AIVILWIGTV QVLNGKISFG ELLTFNALLA YFLSPVENII NLQPTLQTAV VAAERLSEIL DLELEKSEEE YKKIIPQSLK GKIEFKNVDF RYGTRQLILK NINMTINKGE RIALVGESGS GKTTLAKLLL NFYQCEKGEI IVNDYNLLDI NVEALRDKIA YISQETFLFN GTIIENLMLG NPYLTYEEII EACKKAQIHD FINSLPLRYN TLVEENGSNF SGGQKQRLSI ARAILRKPEI LIMDEATSNL DSITEKAIEK TIHEFSEGMT TIIIAHRLST IKRCDNIYIL EKGEIKEQGN HKELLNKKGR YYKLWKEQLP EVDNIEEVQV KEVVEVEI
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