| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1082 |
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| Symbol | |
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| ID | 4204110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | + |
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| Start bp | 1227583 |
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| End bp | 1229799 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 642565638 |
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| Product | bacteriocin ABC transporter, ATP-binding/permease protein, putative |
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| Protein accession | YP_698404 |
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| Protein GI | 110801693 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR01193] ABC-type bacteriocin transporter
[TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.706831 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATATTA ATAGGTATAA GTGTATAAAA CAACATGACT ATAAGGATTG TGGATGTGCA
TGTTTAGCTA CTATATGTAA GCAATATGGA TTAAAATTTC CAATATCTAA AATTAGAGAA
GTAGCTGGAA CAGATAAAGA GGGTACAAGT GCTTTAGGCG TTATACAGGC TGCTGAAAAA
CTTGGATTTT CATCTAAAGG AGTTAAAGCT AATAAACCCG AAGATATATT TGGAGAAATT
CCACTTCCAG CTATAGCTCA TGTTGTTATA GACAAGACAA TGCTACATTA TGTAGTTATA
CATAAAATTA GTAAAAAAGA AATTATAGTT GCTGATCCAG CTAAAGGAAT AGTTAAATAT
AAACCTAGTG ACTTCTTTAA TATTTGGACA GGAATCCTTT TAATAATGAC GCCGACCGCT
GAATTTAAAA AAGGAAATGA AGTTAAAGGA GTATTCACTA GGTTTTTTGA ACTATTAAAG
CCACAAAAAG GATTACTTTT TAACATATTT CTAGCTTCAC TTCTTATAAC GGCATTTGGA
ATAATAGGGT CCTTTTATTT TAAATTTTTG TTGGATGACA TAGTACCTAA TAATTTAAGA
CAATCATTAA CTATATTTTC TATAGGATTT ATACTTTTAG CAATATTTAA GGTTATTACA
GAAGCTTTTA GAACACAACT TCTTATTCAT TTAGGACAAC GTTTAGATAT ACCATTAATG
TTAGGTTATT ATGATCATGT AGTTAATCTT CCTATGAATT TCTTTGGTAC AAGAGAAATT
GGAGAGATTA TATCAAGATT TAATGATGCA TCAAAGATAA GACAGGCTAT ATCAGGGGTT
GCTCTTACTA TGATGATTGA TGTGATTTTG GTTATAGTCG GAGGCGGAAT TCTTTATTAT
CAAAGTTCAT TACTATTTGG AATAACTATA TTCCCTTTAA TTTTATACGG AATAATTGTT
TTTGTATTTA AGAGTAATAT AGAAAAAGTT AATAGAGAAA CTATGGAAGG TAATGCTAAG
TTAACATCAT ATTTAGTAGA ATCTTTAAAT GGAATAGAAA CTATAAAAGC TTTTAATGCA
GAAAGAGAAG TAAATTTAGA AACCGAAAAA AGATTTATAA AGTTTATAAA AGCTATATTT
AAAAATGAGT ACATAAATAA TATTCAAGTA TCTTTAAAAA GCTTGGTAAA AGGAGTTTTT
GCTATAGTTA TTCTATGGAT TGGTACTGTT CAAGTTTTAA ATGGAAAGAT TTCCTTTGGT
GAACTTTTAA CTTTTAATGC TCTACTAGCA TATTTCTTAA GTCCAGTAGA AAATATAATA
AATCTACAAC CAACACTTCA AACGGCAGTT GTAGCAGCGG AAAGATTAAG TGAAATATTA
GATTTAGAAC TTGAAAAGTC TGAGGAAGAA TATAAAAAGA TTATCCCTCA ATCCTTAAAA
GGAAAAATAG AGTTTAAAAA TGTTGACTTT AGATATGGGA CTAGACAACT TATTTTAAAA
AATATAAATA TGACTATTAA TAAAGGTGAA AGAATTGCAC TAGTTGGAGA AAGTGGATCA
GGTAAAACAA CATTAGCTAA GTTATTACTT AATTTTTACC AATGTGAAAA GGGTGAAATT
ATAGTAAATG ATTATAATTT ATTAGATATT AATGTTGAAG CTCTTAGAGA TAAGATAGCA
TATATTTCTC AAGAAACATT TTTATTTAAT GGAACTATAA TAGAAAACTT AATGCTTGGA
AATCCTTATT TAACGTATGA AGAGATTATT GAAGCTTGTA AAAAGGCTCA AATACATGAT
TTTATAAATT CATTACCATT AAGGTATAAC ACATTAGTTG AAGAAAATGG ATCAAATTTC
TCCGGAGGAC AAAAGCAAAG ATTATCTATT GCAAGAGCAA TACTTAGAAA ACCAGAGATT
CTTATAATGG ATGAAGCTAC AAGTAATCTT GATTCTATAA CTGAAAAAGC TATCGAAAAA
ACCATCCATG AATTTAGTGA AGGTATGACG ACTATAATAA TAGCTCATAG ATTAAGCACT
ATTAAAAGGT GTGATAATAT CTACATTTTA GAAAAGGGAG AAATAAAAGA ACAAGGCAAT
CATAAAGAAT TATTAAATAA AAAGGGTAGA TATTATAAGC TATGGAAAGA ACAACTTCCA
GAAGTAGATA ACATTGAAGA AGTTCAAGTT AAGGAGGTTG TTGAAGTTGA AATTTAA
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| Protein sequence | MYINRYKCIK QHDYKDCGCA CLATICKQYG LKFPISKIRE VAGTDKEGTS ALGVIQAAEK
LGFSSKGVKA NKPEDIFGEI PLPAIAHVVI DKTMLHYVVI HKISKKEIIV ADPAKGIVKY
KPSDFFNIWT GILLIMTPTA EFKKGNEVKG VFTRFFELLK PQKGLLFNIF LASLLITAFG
IIGSFYFKFL LDDIVPNNLR QSLTIFSIGF ILLAIFKVIT EAFRTQLLIH LGQRLDIPLM
LGYYDHVVNL PMNFFGTREI GEIISRFNDA SKIRQAISGV ALTMMIDVIL VIVGGGILYY
QSSLLFGITI FPLILYGIIV FVFKSNIEKV NRETMEGNAK LTSYLVESLN GIETIKAFNA
EREVNLETEK RFIKFIKAIF KNEYINNIQV SLKSLVKGVF AIVILWIGTV QVLNGKISFG
ELLTFNALLA YFLSPVENII NLQPTLQTAV VAAERLSEIL DLELEKSEEE YKKIIPQSLK
GKIEFKNVDF RYGTRQLILK NINMTINKGE RIALVGESGS GKTTLAKLLL NFYQCEKGEI
IVNDYNLLDI NVEALRDKIA YISQETFLFN GTIIENLMLG NPYLTYEEII EACKKAQIHD
FINSLPLRYN TLVEENGSNF SGGQKQRLSI ARAILRKPEI LIMDEATSNL DSITEKAIEK
TIHEFSEGMT TIIIAHRLST IKRCDNIYIL EKGEIKEQGN HKELLNKKGR YYKLWKEQLP
EVDNIEEVQV KEVVEVEI
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