| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1057 |
|---|
| Symbol | sdhB |
|---|
| ID | 4204263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 1205740 |
|---|
| End bp | 1206420 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 642565613 |
|---|
| Product | L-serine dehydratase, iron-sulfur-dependent, beta subunit |
|---|
| Protein accession | YP_698379 |
|---|
| Protein GI | 110803391 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1760] L-serine deaminase |
|---|
| TIGRFAM ID | [TIGR00719] L-serine dehydratase, iron-sulfur-dependent, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATC TTTGTGTTTT TGATATATTA GGTCCAGTAA TGGTTGGGCC ATCATCATCT
CATACAGCGG GAGCAGCTAG ACTAGGAAAG GTAGCTAGAG CAGTGGCTGG AGAAAAAATT
GTAGATGTTA AATTTTTGCT TCATGGATCT TTTGCTAAAA CATATAAAGG TCATGGAACT
GATAAGGCTT TACTTGCAGG TATATTAGGA ATGAAGCCAG ATGATGAAAG GCTTAGAAGC
TCATTAACTA TTGCTAAGGA AGAAGGATTA AACTTTGAAT TTATAGAAAG TGATTTAGGA
GATTACCATC CAAATACGGT TAAATTTGTT ATGAAGTGTG AATCTGGAAA AGTTTGTGAG
GTGTTAGGTT CATCAGTAGG TGGAGGAAGC ATAGAAATAG TTGAGGTAAA TGGAAATGAA
GCTAATTTTA GTGGAGCATA TCCAACACTT ATTACATGTC ATGATGATAA ATTTGGTACT
GTAAATAAAG TAACAAAACT TCTTCTTGAA CATGAAATTA ATATTGCTTT TATGAATGTT
TCAAGAACTC AAAAGGGAAT GGATGCTACC ATGACTTTAG AAATAGATAA TAAGGTTGAT
GAATCTGTTA TAAAGAGAAT GGAAGAAATA GATGGAATAA AAAAAGTTAT ACTTATAAAC
TTAGAAGAAG AGGAGAAATA A
|
|---|
| Protein sequence | MNNLCVFDIL GPVMVGPSSS HTAGAARLGK VARAVAGEKI VDVKFLLHGS FAKTYKGHGT
DKALLAGILG MKPDDERLRS SLTIAKEEGL NFEFIESDLG DYHPNTVKFV MKCESGKVCE
VLGSSVGGGS IEIVEVNGNE ANFSGAYPTL ITCHDDKFGT VNKVTKLLLE HEINIAFMNV
SRTQKGMDAT MTLEIDNKVD ESVIKRMEEI DGIKKVILIN LEEEEK
|
|---|
| |