| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0987 |
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| Symbol | |
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| ID | 4205377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | + |
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| Start bp | 1128406 |
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| End bp | 1129092 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 642565544 |
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| Product | ribosomal large subunit pseudouridine synthase f |
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| Protein accession | YP_698310 |
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| Protein GI | 110802829 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGAATAA ACAAGCTTTT TAGCAATTTT GGGATATGCT CTAGAAAAGA AACTAATAAA
ATTATTAGAG AGGGAAGAGT TATTGTTAAT GGCAAGCCGT GTATTGAAGG GCAATGGGTT
GAATTAAGTG ATGAAATACT TTTAGATGGA AAACCCTTAG TTCCAAAGGA AAAGATTTAT
ATAGCACTTA ATAAGCCTGT AGGAGTTGTG TGTACTGCTG CAGAAGAAGT TAAGGATAAT
ATAATAGATT ATTTAGGGAT AGATGATTAT GTTTTCCCAA TAGGAAGGCT AGATAAGGAC
TCTCAAGGAT TAATAATTTT AACTAATGAT GGAGATTTAG CAAATGAAGT TTTAGCAGCA
GAAAATAACC ATGAAAAGGA ATATATAGTA ACCTTAGATC AACCTTTTTA TGATGATTTT
ATTGAAAAGA TGGAGCAGGG TGTTGAAATA TTAGGACAAG TAACAAAACC TTGTAAACTA
AAGAGAATAA ATGAAAATAC CTATTCAATA ATATTAACTC AAGGGTTAAA TAGACAAATA
AGAAGAATGA GTAAGGTTTT TGGCTTTAAT GTAGTTAAGC TAGAGAGAAT TAGAATTCTA
AATATAACTA TTGATAATAT AGAATATGGA AAGTGGAGAT ATATAAATAG GAAAGAAATT
GAGATTTTAA AAAAACTTAT AAAGTAG
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| Protein sequence | MRINKLFSNF GICSRKETNK IIREGRVIVN GKPCIEGQWV ELSDEILLDG KPLVPKEKIY
IALNKPVGVV CTAAEEVKDN IIDYLGIDDY VFPIGRLDKD SQGLIILTND GDLANEVLAA
ENNHEKEYIV TLDQPFYDDF IEKMEQGVEI LGQVTKPCKL KRINENTYSI ILTQGLNRQI
RRMSKVFGFN VVKLERIRIL NITIDNIEYG KWRYINRKEI EILKKLIK
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