Gene CPR_0905 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPR_0905 
Symbol 
ID4205963 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens SM101 
KingdomBacteria 
Replicon accessionNC_008262 
Strand
Start bp1037412 
End bp1038281 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content31% 
IMG OID642565463 
Producttransmembrane permease MsmF 
Protein accessionYP_698229 
Protein GI110803946 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0122469 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAGA TAAGAGAAAA GATAATGGGA ATGGCTTTTT TTGGCCCAGC ATTAGTGTTA 
CTAACATTAT TTTTGTTTAT TCCTATGATT TTAACTTTGA TATTTAGTTT TACAGACTTT
TTTACATTAA ATCCTAGCGC AACTAAGTTT GTTGGACTTA GAAATTATAC AAGATTATTT
AACGATGAGT TATTTGGAAA AGCATTTTTT AATACAATAA AATTTGCACT TGTAGTTGTA
CCATTGCAGA TGGGAGGAGC ATTACTTTTA GCACTTGGCA TAAATAAAGT TACTCATTGT
AAAAAATATT TCAAAATAGC ATTTTTTATT CCAGTAGTAA TGTCACTTGC AGTAGTATCA
ACTTTGTGGA TGCAGATTTA TAGCCCTGAA GGTATATTAA ATAATATGTT AAATGCTATT
GGAATATCAT CTCAGCCATT TATATTCAGT AAAGATCAAG CACTTAATTC TATATCAGCA
TTAAGTATAT GGCAAGGAAT GGGATATCAG ATGATTATAT TTCTAGGTGG CTTGCAGGCT
ATTTCTCCTA GTTTATATGA AGCAGCAGAA ATTGATAATG CAAGTGGATG GGGCAAATTT
TGGAATGTAA CAGTTCCAGA GCTTAAACCA ATTTCAATAT ATATATTATT AACAATTACA
ATAGGAGCAT TTAAATTATT AGTTCAGCCT ATGGTGATGA CAGGAGGAGG ACCAGCCTTC
TCTACATATT CACTTGTGTA CTATATCTAT GATACTGGTA CAGTTAATTG GGATATGGGA
TATTCTTCAG CAATGGCAAT TGTATTTGCA ATTATAGTAA TTGCACTTGC AGGTATTCAA
TATAAACTTA CAAACAAAAA GGAGGATTAA
 
Protein sequence
MNKIREKIMG MAFFGPALVL LTLFLFIPMI LTLIFSFTDF FTLNPSATKF VGLRNYTRLF 
NDELFGKAFF NTIKFALVVV PLQMGGALLL ALGINKVTHC KKYFKIAFFI PVVMSLAVVS
TLWMQIYSPE GILNNMLNAI GISSQPFIFS KDQALNSISA LSIWQGMGYQ MIIFLGGLQA
ISPSLYEAAE IDNASGWGKF WNVTVPELKP ISIYILLTIT IGAFKLLVQP MVMTGGGPAF
STYSLVYYIY DTGTVNWDMG YSSAMAIVFA IIVIALAGIQ YKLTNKKED