Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0828 |
Symbol | |
ID | 4206261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 957408 |
End bp | 958724 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 30% |
IMG OID | 642565387 |
Product | MATE efflux family protein |
Protein accession | YP_698153 |
Protein GI | 110803660 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.478729 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAAA TAGATTTAAC CAAGGGTAAT GTACTAAGTG TCCTTACCAC CTTAGCTCTT CCTATTATGG GAAGTTCATT CCTTCAGTTT GCTTATGGGC TTATAGATAT GTTTTGGGTT GGAGGTCTTG GAAGTAGTGC AGTGGCTAGC ATTGGCTCTT CAAGCTTTTT TTTAGGACTA GGATATTCTA TAAATGCCTT AGTAGTTACG GGAACTGGAA TTAAGGTTTC TCATGAAGTA GGGAGAAAAA ATGAAATAGA GACAGAGGAT TATATAAGAA ATGGTATTAT AATGAATTTT CTTATAGGAC TAATATATGC ATTAGTATTA GTGGTTTTTG GAAAAGGATT CATAGGATTT TTAAATTTAA ATGATCCCTT AGTTGAAAGA GATTCTTATA TATATTTAGC TGTAAGTGCT CCAGTATTAT TTTTTAGCTT TTTTAATTAT CTTTTTACTA GAATATTAGC TAGCTTTGGT AATAATAAAT TAGCTTTAAA AATAAGTGCT ACAGGTATAA TTTTAAATAT GATATTAGAT CCAATATTAA TATATACCTT TAAACTTGGT GTTTTTGGAG CAGCAGTGGC AACCTTACTT GCCAATATAC TTATGTTTTT TATGTATATA TATTATGGAA AAGGAATATT TAAAATAGAT TTAAAAAAGA AAATAAACTA TGAAAAAGTA AGAGAAATAG CTAGATTAGG ATTTCCTATG GCATCACAAA GGGTACTTTT TACCCTAGTG AATATTATAT TAGCTAGAAT TATAGCTAGC TTTGGAGCAG ATGCTATAGC AGCTCAGAAA ATAGGGCTTC AAATAGAATC TGTAAGCTTT ATGGTAATTG GAGGATTAAA TGGGGCTATA GCAGGATTTA CAGGACAAAA TTATGGAGCA AAGAAACTAA ATAGAGTAAA TGAAGGGTAC AAGAAAGCCT TGCTTTTAGG AGCTATCTAC TCAGTACTTG TTTCAGCCTT ATTTATTTTT ATTCCAGGAT TATTAGTAGG ATTATTTGTT AAGGATGAGG CTACAATAAT AATTGGAAGC AGTTATTTAA GAGTACTTGG AATAGTTCAG ATATTTAGTA GTTTTGAGAT GATATCAAAT GGAGTATTCT CAGGATTAGG ACTTCCTAAA ATACCATCAG CCATAAGTAT AATCTTTACT ATGTTAAGAA TTCCTATGGC CTTAGTTTTA GTAAAGTTTT TAGGGATAAA TGGAGTTTGG TGGAGCATTG CAATATCAAA CATATTAAAA GGAAGCACAT CTTGTATAAT TTATAGATTA AAAATTTATA GAAACTATAT TGTGTAA
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Protein sequence | MKKIDLTKGN VLSVLTTLAL PIMGSSFLQF AYGLIDMFWV GGLGSSAVAS IGSSSFFLGL GYSINALVVT GTGIKVSHEV GRKNEIETED YIRNGIIMNF LIGLIYALVL VVFGKGFIGF LNLNDPLVER DSYIYLAVSA PVLFFSFFNY LFTRILASFG NNKLALKISA TGIILNMILD PILIYTFKLG VFGAAVATLL ANILMFFMYI YYGKGIFKID LKKKINYEKV REIARLGFPM ASQRVLFTLV NIILARIIAS FGADAIAAQK IGLQIESVSF MVIGGLNGAI AGFTGQNYGA KKLNRVNEGY KKALLLGAIY SVLVSALFIF IPGLLVGLFV KDEATIIIGS SYLRVLGIVQ IFSSFEMISN GVFSGLGLPK IPSAISIIFT MLRIPMALVL VKFLGINGVW WSIAISNILK GSTSCIIYRL KIYRNYIV
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