| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0743 |
|---|
| Symbol | |
|---|
| ID | 4204365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 869751 |
|---|
| End bp | 870443 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 642565303 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_698069 |
|---|
| Protein GI | 110801613 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00097331 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATATG AAGTTATACT ATTTGATGCA GATGAGACTC TATTTGATTT TAAAAAATCT
GAAAAGGAAG CCTTTAAAAA TGCTATGCTT GACTTTAATA TAGCATATGA CGAAAACTAC
CATTTAAAAG TATATAAAGA AATAAATACT GCTATATGGA AAGAGTTTGA GCAAGGACTT
ATTACACAAA AGAAATTAAA AATAGAAAGA TTTAAAAGAT TATCAGATAA ATTAAATATA
AATTTTGATG CAGCTAACTT TGCTAAATCA TATATGAATC ATTTAGCTGA TGCTTCTTTT
CTATATGAAG ATAGTACTGA CCTTGTAGAA AATCTTAATA AATATTATAA GCTTTCTATA
ATAACTAATG GTCTTAGTTC TGTTCAAGAT AAAAGAATAA GACAATCTAC TATAGCAAAA
TATTTTGACC CTATAGTAAT TTCTGAAGAA ATACTAATCT CAAAACCTGA TCCAAAAATC
TTTGAGCATA CTCTAAAACA TATGAATTTT TCTGATAAGA GTAAAGTATT AATGGTTGGA
GATAGTTTAA CTTCTGATAT ACAAGGTGGT ATAAACTTTG GTATAGATAC TTGTTGGTAC
AACCCTAACA AGATTAAAAA TGAAACTTCA ATAAAACCTA CTTATGAAAT TTCTAGCTTT
GATGAACTAA AATCTTTACT AATTAATTCA TAA
|
|---|
| Protein sequence | MKYEVILFDA DETLFDFKKS EKEAFKNAML DFNIAYDENY HLKVYKEINT AIWKEFEQGL
ITQKKLKIER FKRLSDKLNI NFDAANFAKS YMNHLADASF LYEDSTDLVE NLNKYYKLSI
ITNGLSSVQD KRIRQSTIAK YFDPIVISEE ILISKPDPKI FEHTLKHMNF SDKSKVLMVG
DSLTSDIQGG INFGIDTCWY NPNKIKNETS IKPTYEISSF DELKSLLINS
|
|---|
| |