Gene CPR_0530 details

Gene Information

• Locus tag: CPR_0530
• Symbol: ribD
• ID: 4205289
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: +
• Start bp: 629200
• End bp: 630297
• Gene Length: 1098 bp
• Protein Length: 365 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 642565087
• Product: riboflavin biosynthesis protein RibD
• Protein accession: YP_697858
• Protein GI: 110802102
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGATGAAT TTTTTATGAA AAAAGCTTTG GAATTAGCTA GAAAAGGAGA GGGGTATGTA 
AATCCAAACC CTTTGGTAGG AGCTGTTATT GTTAAGGGTG GAGAAATAAT AGGGGAAGGA 
TACCATGAGT TTTTTGGAGG AGATCATGCT GAAATTAATG CTATTAATAG TTCTGTTAAA 
TCTACTGAGG GAGCAACAAT ATATGTTACC TTAGAACCTT GTTGTCACTA TGGTAAAACT 
CCTCCATGTG TAGAGGCCAT AATTAAAAAT AAATTTAAGA CAGTAGTAGT TGGAACATTA 
GATCCAAATC CTTTAGTATC AGGAAATGGT ATTAAAATTT TAAGAGAGGC AGGTATAGAG 
GTTAAGGTAG GAGTTTTAGA AAAGGAATGT ATTAGATTAA ATGAGATATT TAATTTTTAT 
ATTAAGGAAA ATAGACCTTT TATTGCACTT AAATGGGCAA TGACCTTAGA TGGGAAAATA 
GCAACTAAGG ATTTTAAATC AAAATGGATA ACTAATAAAA AGTCAAGAGA GTTTGTTCAT 
TCCTTAAGAA ATAAATATAG TTCAATAATG GTTGGAATAA ACACTGTTTT AAAGGATAAT 
CCAGATTTAA GATGTAGACT TAATAAAAAT AAAGAGTTAG AAAGAAAGCA TTTTAGGATA 
GTACTTGATA GTAAATTAAA AATTCCTTTA GATTCAGAAA TATTAAAAAA TCAAAGTGAG 
TCAAAAACCT TAATTTTTAC AACAAATAAA AAAGATAAGA TAAAAAATGA AAAATTAAAA 
GATAAAGGCA TAGAGGTAAT AGAAGTAAAT TTAGATGAAG GAAAAATTAA TATTAATCAG 
GTTTTAGAGT GTTTAAAAGA AAAAAATATT GATTCAGTTC TTATTGAAGG AGGAGGAAAT 
TTGAATTTTT CTTTTTTAGA AAATAAAAAA GTAAATAAGA TATATGCCTT TGTTGCACCA 
AAAGTTTTTG GAGGGAAAAA TGCTATTACT CCTGTTGAAG GGGAAGGAAT AAGAAATGTT 
TTAGACGCCT TTGAATTTCC TGAAGTAAAT TTGAAGACCT TTCATAATGA TATTTTAATT 
GAATGTAGCC TTAGTTAA 

 

Protein sequence

MDEFFMKKAL ELARKGEGYV NPNPLVGAVI VKGGEIIGEG YHEFFGGDHA EINAINSSVK 
STEGATIYVT LEPCCHYGKT PPCVEAIIKN KFKTVVVGTL DPNPLVSGNG IKILREAGIE 
VKVGVLEKEC IRLNEIFNFY IKENRPFIAL KWAMTLDGKI ATKDFKSKWI TNKKSREFVH 
SLRNKYSSIM VGINTVLKDN PDLRCRLNKN KELERKHFRI VLDSKLKIPL DSEILKNQSE 
SKTLIFTTNK KDKIKNEKLK DKGIEVIEVN LDEGKININQ VLECLKEKNI DSVLIEGGGN 
LNFSFLENKK VNKIYAFVAP KVFGGKNAIT PVEGEGIRNV LDAFEFPEVN LKTFHNDILI 
ECSLS