| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0495 |
|---|
| Symbol | |
|---|
| ID | 4204431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 588221 |
|---|
| End bp | 590077 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 642565052 |
|---|
| Product | uncharacterized ABC transporter, ATPase component |
|---|
| Protein accession | YP_697823 |
|---|
| Protein GI | 110802376 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAG AAAGAAAAGG CGGAATGGGT GGCCCAATGG GTAGAATGGG CGGAGGCCCA
AGAGCCGTTG AAAAAGCAAA AGATTTTAAA GGAACAATGA AAAAGCTTGG GGTTTATTTA
AAACCCTATA GTTTATCTAT AGCTATTGTA ATATTATTTG CTATAGGAAG TGCTGCCTTC
TCAATTGTAG GACCTAAGAT TTTAGGTAAA GCTACTACAA AAATATTTGA AGGTTTAGTT
CAAAAGATAA CAGGGGTACC AGATGCTTCT ATAGATTTTG GATACATTGG AAATATAGCA
ATGATTTTAG TAGCTCTATA CTTAGTAAGT TCATTATTTG GGATTATACA ATCTTTTATA
ATGTCAGGAG TTGCTCAAAA GGTTTCTTAT AACTTAAGAA AGCAAATATC AGAAAAAATG
GATACTTTAC CTCTTAATTA TTTTGATACA AGAACAAATG GAGAGGTTTT ATCAAGAATT
ACAAATGACG TTGATACAGT GAACCAAACT TTAAATCAAA GTTTATCACA GATAATAACT
TCAGTGGTTA CTTTAATTGG TGTATTAATA ATGATGTTCT CAATAAGTTG GATTATGACT
TTAGCAACAT TTATAATACT TCCAGTTTCA ATGGTTCTTA TATCTTTAGT TGTTAAGAAA
TCTCAAAAAT ACTTTAAATC TCAACAAGAA TACTTAGGTC ATCTTAATGG TCAAATAGAA
GAGGTTTATG GTGGACACAA TATAATGAAA GCTTTCAATA GAGAAGAAGC TTCAACTAAA
GACTTTGATG AATTAAATAA TACTTTATAT AAATCAGCTT GGAAATCTCA ATTCTTATCA
GGTATGATGA TGCCAATCAT GTCTTTTGTA GGAAACTTAG GATATGTTTT AGTTTCAATA
CTTGGTGGAT GGTTAACAAT TAAAAGTGTT ATAACAGTTG GGGATATACA AGCATTTATC
CAATATGTAC GTTCATTTAA CCAACCAATA TCTCAAATGG CTCAGGTTGC AAATATAATG
CAATCAACAG CGGCCGCTGC TGAGAGAGTA TTTGAATTCT TAGATGAAGA GGATGAGGTT
AAAGATCCAG TTAATTCAGT AGATCCTTCA GAAATAAGAG GAGAAGTTGA ATTTGAAGAT
GTTCACTTTG GATATAATGA AGATAAGATA ATAATAAATG ATTTCTCAGT AGATGTTAAA
CCAGGGCAAA AGGTGGCTAT TGTTGGACCT ACAGGAGCAG GTAAAACTAC AATAGTTAAA
TTATTAATGA GATTCTACGA TATAAATAGT GGAAGTATTA AGATTGATGG TCATGATATA
AGAGACTTTA AGCGTGCTGA TTTACGTAAC TTATTTGGTA TGGTTCTTCA AGATACATGG
TTATTTAATG GAACTATAAT GGAGAATTTA CGTTATGGAA GATTAGATGC AACTGATGCT
GAGGTTAAAG AAGCTGCTAA GGCTGCCCAT GTTGATCATT TTGTAAAAAC TTTACCAGAT
GGATATAATA TGGTCTTAAA CGAAGACGCA AGTAATATAT CACAAGGACA AAAGCAGCTT
TTAACAATTG CTAGAGCTTT CTTAAAAGAT CCTAAGCTAT TAATACTTGA TGAGGCTACA
AGTTCAGTTG ACACTCGTAC AGAGCTTTTA ATACAAAAAG CTATGGAAAA ACTTATGGAA
GGAAGAACAA GCTTTATTAT AGCTCACAGA CTTTCTACTA TACGTGATGC AGACTTAATC
CTTGTTATGA AGGATGGAGA TATAGTTGAA CAAGGAAATC ATGAAGAGCT TCTAGAAAAA
GGTGGATTCT ATTCAAGCCT TTACAATAGC CAATTTGAAC AAAATAGTGC TTCATAA
|
|---|
| Protein sequence | MSKERKGGMG GPMGRMGGGP RAVEKAKDFK GTMKKLGVYL KPYSLSIAIV ILFAIGSAAF
SIVGPKILGK ATTKIFEGLV QKITGVPDAS IDFGYIGNIA MILVALYLVS SLFGIIQSFI
MSGVAQKVSY NLRKQISEKM DTLPLNYFDT RTNGEVLSRI TNDVDTVNQT LNQSLSQIIT
SVVTLIGVLI MMFSISWIMT LATFIILPVS MVLISLVVKK SQKYFKSQQE YLGHLNGQIE
EVYGGHNIMK AFNREEASTK DFDELNNTLY KSAWKSQFLS GMMMPIMSFV GNLGYVLVSI
LGGWLTIKSV ITVGDIQAFI QYVRSFNQPI SQMAQVANIM QSTAAAAERV FEFLDEEDEV
KDPVNSVDPS EIRGEVEFED VHFGYNEDKI IINDFSVDVK PGQKVAIVGP TGAGKTTIVK
LLMRFYDINS GSIKIDGHDI RDFKRADLRN LFGMVLQDTW LFNGTIMENL RYGRLDATDA
EVKEAAKAAH VDHFVKTLPD GYNMVLNEDA SNISQGQKQL LTIARAFLKD PKLLILDEAT
SSVDTRTELL IQKAMEKLME GRTSFIIAHR LSTIRDADLI LVMKDGDIVE QGNHEELLEK
GGFYSSLYNS QFEQNSAS
|
|---|
| |