Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0204 |
Symbol | |
ID | 4205777 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 254146 |
End bp | 255369 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 642564761 |
Product | nuclease SbcCD, D subunit, putative |
Protein accession | YP_697539 |
Protein GI | 110802945 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.234178 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGGATAC TTCACACTGC TGATTGGCAT TTAGGAAAGA ACTTAGAAGG ATTAAGTCGT ATGGATGAGC AAGAACGATT TTTAGAGGAT TTTGTTCACA TAGTAAAAGA TAATAATATA GATTTAGTTA TTATAGCAGG GGATGTATAT GATTCTAGTA ATCCTCCAGC TAGGGCAGAA AAAATGTTTT ATGATACCTT AAAAAAGATA TCAGCTAATG GAGAAAGGAT GACTTTAGTT ATTTCAGGAA ACCATGATAA TCCAGAAAGA TTAGTGGCTG CAGGGCCCTT AGCAAGAGAC CATGGAATAA TCATGGTTGG AACTCCTAAG AGCATAGTTG AAGTAGGGGA ATATGGAAGA AATAAAGTTT TAAATTCAGG AGAAGGATTT ATTGAATTAG ATATAAATGG AGAAAAGTCT GTAATATTAA CTGTTCCATA TCCAAGTGAA AAGAGATTAA ATGAAGTTTT ATATGGTGCA ATGGATGAAA CTTGTGAGAG AATAAAAAGT TATAGTGATA GAATAAAGCT TTTATTTGAT TCACTTAAAG GAAATTTTAA AGAAGATACA ATTAATTTAG TGGTATCTCA TCTTTTTGCA ACGGGAGCAG AAAATACTGG TTCAGAGAGA AATATAGAGC TTGGAGGAAG TTTTATTGTT GATAAGGAAT GTTTCCCAGA AGAAGCTCAA TATATTGCTT TAGGGCATAT TCATAAGCCT ATGATTCTAC CAGGAACTAA TAAAAAGATA AGATATGCAG GTTCACCACT TCAATACAAT AAAAAAGAAA TAAGCTTTGA AAAAAAGTGT TTTATTGTAG ATGTTAAAGC AAATGAGGAA GCAAATATAG ATGAAATAAA ATTTGATGTG TACAAGCCTA TAGAAGTTTG GAAGTGTGAT AGCATAGATG AAGCTATTTA CAAATGTGAA GAGAATAAAG ATAGAGAATG TTGGGTTTAT TTAGAGATAA AAACAGATAG ATATATAAGA GAAGATGAAA TAAAGGCTAT GAAGAAGCTT AAAGGGGATA TTATTGAAAT TATTCCTAAG ATAACACTAG ATGAAGAGGA GAATGATGAA AGAAGTTTTT CAGAAAAATC TTTTGAAGAA TTATTCACTG ACTTTTACGA AAAGGAAAGA GGGGTTAAGC CAGAGGAAGA TTTATTAGAG CTTTTACTTA ATATAGTTAA AGAGGAAGGG GATGAAGAAA ATGAAACCAA TTAA
|
Protein sequence | MRILHTADWH LGKNLEGLSR MDEQERFLED FVHIVKDNNI DLVIIAGDVY DSSNPPARAE KMFYDTLKKI SANGERMTLV ISGNHDNPER LVAAGPLARD HGIIMVGTPK SIVEVGEYGR NKVLNSGEGF IELDINGEKS VILTVPYPSE KRLNEVLYGA MDETCERIKS YSDRIKLLFD SLKGNFKEDT INLVVSHLFA TGAENTGSER NIELGGSFIV DKECFPEEAQ YIALGHIHKP MILPGTNKKI RYAGSPLQYN KKEISFEKKC FIVDVKANEE ANIDEIKFDV YKPIEVWKCD SIDEAIYKCE ENKDRECWVY LEIKTDRYIR EDEIKAMKKL KGDIIEIIPK ITLDEEENDE RSFSEKSFEE LFTDFYEKER GVKPEEDLLE LLLNIVKEEG DEENETN
|
| |