Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0179 |
Symbol | |
ID | 4204629 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 219431 |
End bp | 220270 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 642564734 |
Product | RpiR family transcriptional regulator |
Protein accession | YP_697516 |
Protein GI | 110802554 |
COG category | [K] Transcription |
COG ID | [COG1737] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.912597 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGAATAT TAGAACAATT AGAAAATCCA AAATTTAAAG CAACTAAGTC AGAAAAGACA TTAATTGAAT ATATAAAGTC AGATTTAGAC AATATTATAT ACAAATCAAT ATCTATAATA GCTAAGGAAT CAGGAGTAGG AGAAGCTACC ATAACAAGGT TTACTAAGAA GTTGGGGTTT AATGGATTCC AAGACTTTAA AGTTACTTTA GCAAAGGAGA TCTCAAACAA AAAAAATACA AGCATTATAA ATTTGCATGT TCATAGGGAT GAGAGTGTAA CAGAAACTGC AAATAAGATG TTAAAATCAT CTATTAATAT ATTAGAGCAA ACAGTTAAGC AGATTGATTT AGATTTAATG TGCAAATGCA GAGATTTAAT AATGAATGCT AAGAGAGTTT ATTTCATAGG TATAGGTTAT TCAGGAATAG CTGCTACAGA TATAAACTAT AAATTCATGA GAATTGGATT TACAACAGTA CCAGTAACTG ATAGCCATAC AATGGTTATT ATGTCATCTA TAACAAATGA TGATGATGTA ATAGTTGCTA TTTCAAACTC AGGTACTACT AAAGAAGTAA TAAAAACTGT AAAACAAGCT AAAGAAAATG GCACAAAGAT AATAACTTTA ACAGAAGATA GTGATAATCC ATTAAGAAAG TTATCTGATT ATGAATTGAC ATATAAATCA GCTGAGACAA TTTTTGAGAC AGGATCAATA TCATCAAAAA TACCACAAAT ATTTTTATTA GATCTATTAT ATACAGAGGT AATTAAAGAA ATGTTTAGTG AGGCTGTTGA AAAGAAAATC AAGACTACTA GTGCAATTCT TAATGATTAA
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Protein sequence | MGILEQLENP KFKATKSEKT LIEYIKSDLD NIIYKSISII AKESGVGEAT ITRFTKKLGF NGFQDFKVTL AKEISNKKNT SIINLHVHRD ESVTETANKM LKSSINILEQ TVKQIDLDLM CKCRDLIMNA KRVYFIGIGY SGIAATDINY KFMRIGFTTV PVTDSHTMVI MSSITNDDDV IVAISNSGTT KEVIKTVKQA KENGTKIITL TEDSDNPLRK LSDYELTYKS AETIFETGSI SSKIPQIFLL DLLYTEVIKE MFSEAVEKKI KTTSAILND
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