| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0025 |
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| Symbol | addA |
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| ID | 4205721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | + |
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| Start bp | 29654 |
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| End bp | 33466 |
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| Gene Length | 3813 bp |
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| Protein Length | 1270 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 642564568 |
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| Product | recombination helicase AddA |
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| Protein accession | YP_697370 |
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| Protein GI | 110802763 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02785] recombination helicase AddA, Firmicutes type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGACTA AATGGACTGA AGAACAAGAA TTAGCTATAA ATACTAGAAA ATGCAACCTT
TTAGTAGCGG CTGCGGCTGG CTCAGGAAAA ACTGCTGTAT TAGTTGAAAG AATTATAAAA
ATGATAACAG AGGGTGAAAA TCCTGTTGAT ATAGATAAGT TACTAGTTGT TACATTTACT
AATGCTGCTG CCTCTGAAAT GAGAGAGAGA ATAGGTGATG CGATATCTAA AGCTTTGGAG
AAGGATCCTA GTTCTGAAGT GCTTCAAAGA CAATTAGCTC TTTTAAATAG AGCTAGTATA
ACAACTATGC ATTCTTTTTG TTTAGAAGTT ATAAAAAATA ATTTCCACTT AATAGACTTA
GACCCAGGGT TTAGAATAGG AGATCAAACA GAATGTGAAC TTATAAAGCA AGATATTTTA
GCTGACCTTT TTGAGGATAT GTATGCTAAG GATGATGAGT GCTTTAAAGA TTTAGTTGAG
GCTTATGGTG GAAGCAAAAG TGATGATAAT TTAAATAGCA TAATATTAAA ATTCTATAAT
TTTATAATGA GTGGTCCTTG GCCAGAATCT TGGTTAAAGG ATAAGGTAGA AGAATTTAAT
ATAAATTCTA TAGAGGAACT TGAAGGCAAG AAGTGGATAG AAGTCTTAAA GGAAAGTATA
ATTTTAGACT TAAATAATGC ATATTCAATG CTTACTCAAG CTAGGGATAT AGCTGAAATG
GGTGGAGGAC TTGAGCCTTA TTTAGTTAAT ATATATCCTG AAATAATTCA AGTTGAAGAG
CTTAGAATTG CTTTAAGTGA AGGAATAGTA AAGTTTTATA ATAAGCTTAT GGGAGCAAGC
TTTGGAAGAC TAAAATCAGT TAGAAAAGCT AGTGTTGATG ATGAAAAAGC CTTAGAAAAA
ACTAAAAGTC TTAGAGATGA AAGTAAAAAA ATAATAGAAA ATTTAAGGGA TAATGTTTTT
GAAACTTCCT TAGAAGAAGC TGTTTTAGGA ATGAAAAAGA TGTATCCATT AATGAAATGT
TTAAGTGGTT TAATAATTGA ATTTTCTAAT AGGTATAGAG ATAAAAAAAG AGAAAAGGAT
ATTTTAGATT TTAATGACTT AGAGCATCTT TGCTTAGAAA TATTAATAGA TAAAGATGAA
GAGGGGAATA TAAAACCTTC ACAGGTTGCC TTAGAATTTA AGGATAAATT TGAAGAAGTT
TTAGTTGATG AATATCAAGA TAGTAATACC ATTCAAGAAA CTATTGTAGG AATGGTATCA
AGAAGAGATG TAGAAAATCC TAATGTATTC ATGGTTGGAG ATGTTAAACA AAGTATATAT
AAGTTTAGAC AGGCAAATCC AGAACTTTTC TTAGAGAAAT ATATTAATTA TAGAGAGTTT
GAAGATTCTA ATAGAAAAAT AATGCTTTAT AAAAACTTTA GAAGTAGAGA AGAAATTATA
AATGGAGTAA ACTATATCTT TAAAACCTTA ATGAGCAATA CTGTAGGAGA GCTTGAATAT
GATGAAAAAG AGGCTTTAAA CCTAGGGGCT TCCTATGGGG AGTTAAATGA GGAAAATGTA
GAGAAAGAAT ATATAGATGA AATAGAAAAT CTAAAGGTCG CTGGTGATAT AGAGCTAAAC
ATATTAAATA AAGCAGGTAA CAAGGATTAT AGTGATGATG AACTAGGAGA AGAGGAAGAA
GATTTAGATA GCATACAGTT AGAAGCTAGA ATAATTGGCA AAAAGATTAA TGAGCTAATG
AATCCTGAAG ATGGAAGTCA CTATATGGTT TTTGATAAGG ATTTAGGAAA ATATAGAAAG
ATTAAATACA AGGATATTGT TATCCTGCTT AGAGCAACTA AAAATTGGGC AGATACCTTT
GTTGATGAGT TAGGGACTTA TGGAATACCT GTTTATGCTG ACACAGGAAC AGGATATTTT
CAAACTATTG AAATTAGAAC TATATTAGCC TTATTACACA TAATAGATAA TCCAATGCAG
GATATTTATA TATTATCTTC CTTACGTTCA CCAATATTTT CATTTACATC TGAAGAATTT
GCAGATTTAA GATTATTAAA TAAAGATAAA TACTTCTTTG AAATAATAAA GGAAGTTGTA
GATGGAATTT ATGATGAAAG TATATCTAAA GATTTAAAAG GAAAGTGTAA GTACTTCCTA
GACTATTTAA ATAAATGGAG AGAAAAGGCA GCATATATGC CAATAGATGA ATTTATTTGG
TTCTTATATT CTGATACATC ATACTATGGG TATGTTGGAA CAATGCCAAA TGGAGTTCAA
CGTCAAGCAA ATTTAAGAAT ACTATTCCAA AGAGCAAAGC AATATGAATC AACTAGTTTT
AAGGGATTAT TTAATTTTAT AAACTTCATA AATAAGCTTA AAAAGTCTTC TGGAGATATG
GGAAGTGCAA AGATTCTTGG AGAAAATGAG AATGTTGTAA GGATAATGAG TATTCACAAG
AGTAAAGGGC TAGAGTTCCC AGTTGTTATA TTAGGTGGAA CAGGAAAGCA ATTTAACAAG
ATGGACTTAA GAGAAGATAT ACTACTTCAT GAAACCTTAG GTATAGGAAC AAATTGTATA
GATGTTAAGA AGAGAATAAA GTATGATACT CTTCAAAAGC ATGCTATAAA GAAAAAATGT
GAATTAGAAG TTTTATCAGA AGAAATGAGG ATACTTTATG TTGCCTTTAC AAGAGCTAAG
GAAAAATTAA TTATAACTGG TGCTGTATCA GATTTAGAAA AGTCTTGTGA AAACTGGTGC
AAAGCTTCAG CTTCTTCAGA GGATAATAGA ATAAACCCTG GAAATGTTTT AAAGGGAAAG
AGTTATTTAG ATTGGATTGG CATGGCTTTA ACAAAGCACA AGGATGGAGA TGCTATAAGA
AATGTTGGTA ATGGAGATAT AACTTTAAAT TTAGATGATA AATCTAATTG GAGTTTTAAA
AGCTTTGATA GAAGTGAGCT TTTAGAAACA AACAATAATA AAAAAGAAAA AAATAATATT
GATATTTTTG AAAGTAATAA TTGGATTGAA TCTAAAAAAG ATATAAAAGA AGTTATAGAA
ATAAGAAATA GACTAGGCTT TAAATATAAA TATATAGAGT CTTGTAATAC TCCTTCAAAT
ATTTCTGTAA CCGAATTAAA GAGAGCTCAT CAAGAAGAAG AGTTTATGCA AGAAAGTTAT
AATATTATTG ATAATGAAAG TAGTGAAGAA AATAAAAAAG AAAAAATAAA AAGAAAACCA
AGATTTATGG AGGAAAGACA GGAAGAATTC TCAGCAGCTA AGAAGGGGAC TATAACTCAC
TTTGTAATGC AACATATTGA TTTAGATAAG GTAACTTATA TAGATGAAAT AAGAGAAGAA
GTTCTTAAAA TGGTTAAAAA AGAACTTTTA ACAGAAGAAG AAGGAAAAGT AGTAAATGTA
TTTAAAATAC AAAAATTCTT TAAAAGTGAA TTAGGACAGA GAATGTTAAG CTCATATAAA
TCTGGCAAAA AGGTATATAG AGAACTACCA TTTATAACTG AGATTCCAAG CAGTATTATA
GAAAAAAATC TTGATCCTAA AATCTATGGA GAGGAAAAAG TAAGATTGCA AGGTATTATA
GATGCCTTCT TTGAGGAAGA GGATGGATAT GTTCTTTTAG ATTATAAAAC TGATTATGTT
AAAGAGGGAG AGGAAGAGGC CTTCATAAAT AAATACAAAA TTCAAATTAA CTTATATAAG
GACACATTAA ATAAAATTTT AGGGGAAGAA GTTAAGGAAG CTTATCTGTA TTCCTTCTAT
CTTGAAAAAG AATTAAAAAT AAGCAAGGAA TAA
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| Protein sequence | MGTKWTEEQE LAINTRKCNL LVAAAAGSGK TAVLVERIIK MITEGENPVD IDKLLVVTFT
NAAASEMRER IGDAISKALE KDPSSEVLQR QLALLNRASI TTMHSFCLEV IKNNFHLIDL
DPGFRIGDQT ECELIKQDIL ADLFEDMYAK DDECFKDLVE AYGGSKSDDN LNSIILKFYN
FIMSGPWPES WLKDKVEEFN INSIEELEGK KWIEVLKESI ILDLNNAYSM LTQARDIAEM
GGGLEPYLVN IYPEIIQVEE LRIALSEGIV KFYNKLMGAS FGRLKSVRKA SVDDEKALEK
TKSLRDESKK IIENLRDNVF ETSLEEAVLG MKKMYPLMKC LSGLIIEFSN RYRDKKREKD
ILDFNDLEHL CLEILIDKDE EGNIKPSQVA LEFKDKFEEV LVDEYQDSNT IQETIVGMVS
RRDVENPNVF MVGDVKQSIY KFRQANPELF LEKYINYREF EDSNRKIMLY KNFRSREEII
NGVNYIFKTL MSNTVGELEY DEKEALNLGA SYGELNEENV EKEYIDEIEN LKVAGDIELN
ILNKAGNKDY SDDELGEEEE DLDSIQLEAR IIGKKINELM NPEDGSHYMV FDKDLGKYRK
IKYKDIVILL RATKNWADTF VDELGTYGIP VYADTGTGYF QTIEIRTILA LLHIIDNPMQ
DIYILSSLRS PIFSFTSEEF ADLRLLNKDK YFFEIIKEVV DGIYDESISK DLKGKCKYFL
DYLNKWREKA AYMPIDEFIW FLYSDTSYYG YVGTMPNGVQ RQANLRILFQ RAKQYESTSF
KGLFNFINFI NKLKKSSGDM GSAKILGENE NVVRIMSIHK SKGLEFPVVI LGGTGKQFNK
MDLREDILLH ETLGIGTNCI DVKKRIKYDT LQKHAIKKKC ELEVLSEEMR ILYVAFTRAK
EKLIITGAVS DLEKSCENWC KASASSEDNR INPGNVLKGK SYLDWIGMAL TKHKDGDAIR
NVGNGDITLN LDDKSNWSFK SFDRSELLET NNNKKEKNNI DIFESNNWIE SKKDIKEVIE
IRNRLGFKYK YIESCNTPSN ISVTELKRAH QEEEFMQESY NIIDNESSEE NKKEKIKRKP
RFMEERQEEF SAAKKGTITH FVMQHIDLDK VTYIDEIREE VLKMVKKELL TEEEGKVVNV
FKIQKFFKSE LGQRMLSSYK SGKKVYRELP FITEIPSSII EKNLDPKIYG EEKVRLQGII
DAFFEEEDGY VLLDYKTDYV KEGEEEAFIN KYKIQINLYK DTLNKILGEE VKEAYLYSFY
LEKELKISKE
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