| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2961 |
|---|
| Symbol | |
|---|
| ID | 4201753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 3225625 |
|---|
| End bp | 3226797 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 638083828 |
|---|
| Product | putative sugar isomerase |
|---|
| Protein accession | YP_697315 |
|---|
| Protein GI | 110801079 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2222] Predicted phosphosugar isomerases |
|---|
| TIGRFAM ID | [TIGR02815] putative sugar isomerase, AgaS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA TTTTTGGATT TACTCAAGAA GAATTATCCA GCTTAAAAGC CACTTATACA
GCCAATGAAA TATATCAACA ACCAGAATTA TGGAAAGAGA CTTTAAACAT AGTAGAAAAT
AATAAAGAAG CTATAAATAA ATTCTTAGAA AAAAATTTAA ATAAAGACAA TGTAAGAATA
ATCTTAACTG GAGCAGGAAC ATCTGCCTAT GTTGGAGATA CCATATATCT TTATTTAGCT
AAAAAGTTAG GTAAAAGAGT TGAAGCTATA GCAACTACTG ACTTCGTTTC AAATCCAGAT
GAATATATAG ATGAAAATGC AAATACCATC TTAGTTTCTT ATGCTCGTTC TGGTAATAGC
CCAGAAAGTG TTGGAACTTA TGATTTATTT GAAAAGAAAG TTAAAAATCT AGCACACATA
GTTGTTACTT GTAATAAAGA GGGTGAGCTT GCTAAGAAGT CTCAAGAAAA AGAAGGAAAC
TTAGTTTTAT TAATGCCAGA AAAATCAAAT GATAAGAGTT TTGCTATGAC AAGTTCCTTT
ACTTGTATGA CATTAGCTAC TCTACTTTTA TTTGATATAG CTAATCTAGA AGAAAATAAA
AAAATCGTTG AAGAATTAGC TACTAAAGGA CAAGCTTCTC TTGATAATCA ATGGAAAGAT
GCAAAAGCAA TTTCAGATTT AGGAGCAGAA AGAATTGTTT ATGTAGGTTC TGGCGCCTTA
AAGGGTCTTT GCCATGAAAT GGCTCTTAAA AATTTAGAAT TAACTTCTGG TAAACAAGTT
ACTGTTTGTG AATCAATCTT AGGCTTTAGA CATGGTCCTA AGTCAATAAT AAATAATAAT
ACTTTAGTTA TATTCTTATG CTCTACAAAT GATTATACAG CTCTTTATGA TTATGACTTA
ATAAAAGAAG TTTATAATGA TGAAGGTACT CAAAAGGTTG CTGTTTTAAA TTATTTTGAC
AGAGAAAATC TTAAGGAAAT TTCTCATAAA TATATAACAG CTAATGGATC TAAATTAGAT
GATACATTTA TAGCATTTAA TTATATAATA TTTGGTCAAA TGATTTCTTT CTTTAACTCT
TTAAGACTTG GAATTTCTCC TGATAATCCA AGACCTGATG GAACAGTTAA TAGAGTTGTT
CAAGGGGTTA TAATTCACGA ATATAATAAT TAA
|
|---|
| Protein sequence | MNKIFGFTQE ELSSLKATYT ANEIYQQPEL WKETLNIVEN NKEAINKFLE KNLNKDNVRI
ILTGAGTSAY VGDTIYLYLA KKLGKRVEAI ATTDFVSNPD EYIDENANTI LVSYARSGNS
PESVGTYDLF EKKVKNLAHI VVTCNKEGEL AKKSQEKEGN LVLLMPEKSN DKSFAMTSSF
TCMTLATLLL FDIANLEENK KIVEELATKG QASLDNQWKD AKAISDLGAE RIVYVGSGAL
KGLCHEMALK NLELTSGKQV TVCESILGFR HGPKSIINNN TLVIFLCSTN DYTALYDYDL
IKEVYNDEGT QKVAVLNYFD RENLKEISHK YITANGSKLD DTFIAFNYII FGQMISFFNS
LRLGISPDNP RPDGTVNRVV QGVIIHEYNN
|
|---|
| |