| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2722 |
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| Symbol | rpoB |
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| ID | 4201802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2984412 |
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| End bp | 2988116 |
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| Gene Length | 3705 bp |
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| Protein Length | 1234 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 638083588 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_697102 |
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| Protein GI | 110799233 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.304828 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTACATC CTGTCCAAGT TGGAAAAAGA ACGAGAATGA GCTTTGCAAA AGTCAAAGAC
GTGGCTGAAA TGCCAAACCT AATTGAAATT CAATTAGATT CTTACAAATG GTTTTTAGAT
GCAGGACTTT ATGAAGTTTT TGATGATATT AATCCTATCT CAAACTTTAC TGGAAATCTT
GTACTTGAGT TTGTAGGGTA CACTCTAGAT ATGGATAACA TAAAATATTC AGTTGAAGAG
TGTAAAGAAA GAGACACTAC TTATGCTGCA CCGCTAAAAG TAGCTGTAAG ACTTCAAAAC
AAAGAAACTG GAGAAATAAA AGAACAAGAG GTATTTATGG GAGATTTCCC ATTAATGACA
GAGCAAGGAA CTTTTATAAT CAATGGTGCC GAAAGAGTTA TTGTTTCTCA GTTAGTAAGA
TCACCAGGTG TTTACTACAA TTATAATGTA GATAAAACTG GTAAAAAACT GTTCTCTGCA
ACAGTAATAC CTAACAGAGG TGCATGGTTA GAGTATGAAA CAGATTCAAA TGATGTTATC
TATGTAAGAA TAGATAAAAC AAGAAAACTT CCTATAAGTA TACTAGGAAG AGCTATGGGT
TTTGGAAGCG ATCAAGAACT TCTTGAGTAT TTTGGTGAAG AAGAAAGATT CAAAGCTACA
ATAGAAAAAG ATAATACTAA GACTAAAGAA GAAGCATTAT TAGAAATCTA TAAGAGATTA
AGACCAGGTG AACCACCTAC AGTTGATAGT GCAATTAGTT TAATAGATTC TTTATTCTTC
GATGCTAAGA GATACGACTT ATCAAGAGTT GGTAGATACA AGTTTAACAA AAAACTTGCA
ATTGGTTTAA GAATAGCTAA CCAAATAGCA GCAGAAGATA TAGTAGATAA ATTAACTGGT
GAAGTTTTAG TTGCAAAAGG TGAAAAAATA TCAAGAGCTA ATGCTGAAGA AATCCAAAAT
AGAGGAATAA ATTCAGTTGA TGTTTTAGTT GAAGACAGAG TAATTAGAAT TATTGGTAAC
CACTTTGTAG ATATACATAA GTGTGTGGAC TTCGATATAT CAGATTTAAA TATCAGAGAA
TTAGTTCACT ACCCAACATT AAGAGAGATC TTAGATAACT ATTCTGATGA AGAAACTATA
AAAGAAGAAA TCAAAAAGAA TATGACAAGA CTTATTCCTA AGCACATCAT CAAAGATGAT
ATATTCGCTA CAATAAGTTA CCAAATTGGC TTAGCTTATA ATATTGGATA TGTTGATGAT
ATAGACCACT TAGGAAACAG AAGATTAAGA AGTGTTGGTG AGCTTTTACA AAATCAATTT
AGAATTGGTT TATCAAGAAT GGAAAGAGTA GTTAAAGAGA GAATGACTAT TCAAGACCAA
GAAGCTATAA CACCACAACA ATTAATCAAT ATAAGACCAG TAGCAGCAGC TATAAAAGAG
TTCTTTGGAA GCTCACAGTT ATCACAGTTC ATGGATCAAA CAAACCCATT ATCTGAGTTA
ACTCATAAGA GAAGATTATC AGCTCTTGGA CCAGGAGGTC TTTCAAGAGA AAGAGCTGGT
TTCGAAGTTA GAGACGTTCA CCACTCTCAT TATGGTAGAA TGTGTCCTAT CGAGACTCCA
GAGGGACCAA ACATAGGTCT TATAAACTCA TTAGCTACAT ATGCTAAAGT TAATGAGTAT
GGCTTTATTG AAACTCCTTA TAGAGTTGTA GATAAAGCAG AAGGTAGAGT AACTGGTGAA
ATAAGATACT TTACTGCAGA TGAGGAAGAC CAATACCTAG TAGCTCAGGC TAATGAACCA
TTAGACGAAA ATGGATGCTT TATTGATAAG AAAGTAACTG TTAGAGATAA AGGTGAGGTA
TTAGTAGTTC CAAGTAAGGA TGTTGACTTA ATGGACGTTT CTCCAAGACA GCTAGTATCT
GTTGCAACAG CAATGATACC TTTCTTAGAG AACGACGACG CATCAAGAGC CCTAATGGGA
TCAAACATGC AACGTCAAGC AGTTCCTTTA TTAAAACCAT ATGCTCCAAT AGTTGGTACT
GGAATAGAAT ACAAAGCAGC TGTAGATTCA GGGGTTCTTC CTAAAGCTAA AAATGCTGGT
GAAGTAGTTT ATGTAAGTGC TAACGAAGTA AGAGTTAAGA GAGAATTAGA TGGTGGTGTT
GATACTTATA GACTTCTTAA ATTCAAGAGA AGTAACCAAG GTACTTGTAT AAACCAAAGA
CCAATAGTGG CTAAAGGTGA CTGGGTACTT AAAGGTGAAG TATTAGCAGA TGGACCTTCA
ACTGATTTAG GAGAAATAGC TTTAGGTAAA AACATAAGAA TGGGATTCAT TACTTGGGAA
GGATATAACT ACGAGGATGC TATGCTTATC TCAGAAGAGT TAGTTAGAGA AGACGTATTT
ACATCAATCC ATATAGAAGA ATATGAATGC GAAGCTAGAG ATACTAAATT AGGACCAGAA
GAAATAACTA GAGATATTCC AAACGTAAGT GAGGATGCTT TAAAAGATAT AGATGAAAGA
GGTATAATCA GAATCGGTGC TGAGGTAAGA TCAGGAGATA TTCTTGTTGG TAAAGTAACA
CCAAAAGGAG AAACTGAACT TACTGCTGAG GAAAGATTAT TAAGAGCTAT CTTTGGTGAA
AAAGCTAGAG AAGTTAGAGA TACTTCTTTA AGAGTTCCAC ACGGGGAAGC TGGTATAATA
GTAGATGTAA AAGTATTTAC AAGAGAAAAT GGTGATGATT TATCACCAGG AGTTAATGAA
CTTGTAAGAT GTTACATTGC TCAAAAGAGA AAAATATCTG TTGGAGATAA GATGGCTGGT
CGTCACGGTA ACAAAGGGGT TATCTCAAGA GTATTACCAG AAGAAGATAT GCCATTCTTA
CCAGATGGTA GACCACTTCA AATATGTTTA AACCCACTAG GGGTTCCATC TCGTATGAAC
ATCGGTCAGG TATTAGAGGT TCACTTAGGA TGGGCTGCAA GTGCATTAGG ATGGCACATT
GCTACACCAG TATTTGATGG TGCTACAGAA ACTGATATAG AAGATTGCTT AGAAAAAGCA
GGATACAATA GAAACGGAAA AACAGTTTTA AGAGATGGTA GAACTGGTGA AGAGTTTGAT
AACGAAGTAA CAGTTGGTAT AATGTACATC TTAAAACTTG CTCACTTAGT TGATGATAAG
ATCCATGCTA GATCAACAGG ACCTTACTCA TTAGTAACTC AACAGCCACT TGGTGGTAAG
GCACAATTCG GAGGACAAAG ATTCGGAGAG ATGGAGGTTT GGGCATTAGA AGCATACGGT
GCTGCTCATA CTCTTCAAGA AATACTTACT GTTAAGTCAG ATGATGTTGT AGGTAGAGTT
AAAACTTACG AAGCTATTGT TAAAGGTGAA AACATTCCTG AACCAGGAGT GCCAGAATCA
TTTAAGGTTC TTATTAAAGA ACTTCAAGCT TTATGCTTAG ACGTTAAAGT TTTAAATGAT
AATAACCAAG AAGTTAAATT CAAAGAATTA GCTGAAGATG ATGATGAAAT CGAAGTATTA
GAAGTTAACA TGGAAGGTAC TGAAGATTCA ACAACAGAAG AAGCTAAAGA GGAAAAAGGG
GAAGCATACA TCCCAGCAGA AGAAATTGAT GAAGAAATAG ACTATGAAAA CATAGACTTA
TTAGACTTCA CAAGTGATTT AGACATAGAA GATGATTTTA ACTAG
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| Protein sequence | MVHPVQVGKR TRMSFAKVKD VAEMPNLIEI QLDSYKWFLD AGLYEVFDDI NPISNFTGNL
VLEFVGYTLD MDNIKYSVEE CKERDTTYAA PLKVAVRLQN KETGEIKEQE VFMGDFPLMT
EQGTFIINGA ERVIVSQLVR SPGVYYNYNV DKTGKKLFSA TVIPNRGAWL EYETDSNDVI
YVRIDKTRKL PISILGRAMG FGSDQELLEY FGEEERFKAT IEKDNTKTKE EALLEIYKRL
RPGEPPTVDS AISLIDSLFF DAKRYDLSRV GRYKFNKKLA IGLRIANQIA AEDIVDKLTG
EVLVAKGEKI SRANAEEIQN RGINSVDVLV EDRVIRIIGN HFVDIHKCVD FDISDLNIRE
LVHYPTLREI LDNYSDEETI KEEIKKNMTR LIPKHIIKDD IFATISYQIG LAYNIGYVDD
IDHLGNRRLR SVGELLQNQF RIGLSRMERV VKERMTIQDQ EAITPQQLIN IRPVAAAIKE
FFGSSQLSQF MDQTNPLSEL THKRRLSALG PGGLSRERAG FEVRDVHHSH YGRMCPIETP
EGPNIGLINS LATYAKVNEY GFIETPYRVV DKAEGRVTGE IRYFTADEED QYLVAQANEP
LDENGCFIDK KVTVRDKGEV LVVPSKDVDL MDVSPRQLVS VATAMIPFLE NDDASRALMG
SNMQRQAVPL LKPYAPIVGT GIEYKAAVDS GVLPKAKNAG EVVYVSANEV RVKRELDGGV
DTYRLLKFKR SNQGTCINQR PIVAKGDWVL KGEVLADGPS TDLGEIALGK NIRMGFITWE
GYNYEDAMLI SEELVREDVF TSIHIEEYEC EARDTKLGPE EITRDIPNVS EDALKDIDER
GIIRIGAEVR SGDILVGKVT PKGETELTAE ERLLRAIFGE KAREVRDTSL RVPHGEAGII
VDVKVFTREN GDDLSPGVNE LVRCYIAQKR KISVGDKMAG RHGNKGVISR VLPEEDMPFL
PDGRPLQICL NPLGVPSRMN IGQVLEVHLG WAASALGWHI ATPVFDGATE TDIEDCLEKA
GYNRNGKTVL RDGRTGEEFD NEVTVGIMYI LKLAHLVDDK IHARSTGPYS LVTQQPLGGK
AQFGGQRFGE MEVWALEAYG AAHTLQEILT VKSDDVVGRV KTYEAIVKGE NIPEPGVPES
FKVLIKELQA LCLDVKVLND NNQEVKFKEL AEDDDEIEVL EVNMEGTEDS TTEEAKEEKG
EAYIPAEEID EEIDYENIDL LDFTSDLDIE DDFN
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