| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2680 |
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| Symbol | truA |
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| ID | 4202055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2955640 |
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| End bp | 2956374 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 638083546 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_697060 |
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| Protein GI | 110799502 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000443367 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGGAATA TAAAATTAAC TATAGAATAT GATGGAACAT CTTATTTTGG GTGGCAAAAA
CAGCCTATAG GAAATACTAT TCAGCAGAAG GTAGAAGAGG CTATAAAGAA GGTTACTAAA
GAAGAGGTAG AAATATTAGG AAGTAGTAGA ACAGATTCAG GAGTCCATGC TAAGGCCTAT
GTGGCTAATT TTAAAACTAA TTCTAATATA CCAGGAAAAA ATTTTAAGGC TGCATTAAAT
TCAAAATTAC CAAAGGATAT AGTAATAATG AATTCAGAAG AGGTAGCTGA GGATTTTCAT
GCTAGGTATA TGACTACAGG TAAAACTTAT TGTTACACAA TACTAAATAG AGAAGAGCCA
CCAGCCTTAG AAAGAAATTA TGTATATCAT GTTAAAAAGC AATTAGATGT TGAATCTATG
AAAGAAGCAT GTAAATACTT TTTAGGAAAA CATGACTTTA AGGCCTTTCA AAGACCAGGT
GGGACAGTTA AGACCTCTGT AAGAACAATA ACCGATATTC ATATTGAAAC AGAAGGAAAT
AAAATTAAAA TATATGTGTC AGCAGATGGT TTTTTATATA ATATGGTAAG ATTAATTGTA
GGAACATTAC TTAAAGTGGG AAGAGGAAAA GAGAAGCCAG AATATATAAA GGAAGTCATA
GATTCTGGTG ATAGAAAAAA AGCTGGAATT TGTGTTCCTC CAACAGGATT ATGCTTAGAA
AAAGTTTTTT ACTAA
|
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| Protein sequence | MRNIKLTIEY DGTSYFGWQK QPIGNTIQQK VEEAIKKVTK EEVEILGSSR TDSGVHAKAY
VANFKTNSNI PGKNFKAALN SKLPKDIVIM NSEEVAEDFH ARYMTTGKTY CYTILNREEP
PALERNYVYH VKKQLDVESM KEACKYFLGK HDFKAFQRPG GTVKTSVRTI TDIHIETEGN
KIKIYVSADG FLYNMVRLIV GTLLKVGRGK EKPEYIKEVI DSGDRKKAGI CVPPTGLCLE
KVFY
|
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