| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2596 |
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| Symbol | hsdR |
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| ID | 4202108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2860476 |
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| End bp | 2863655 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 638083463 |
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| Product | type I restriction-modification system, R subunit |
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| Protein accession | YP_696986 |
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| Protein GI | 110800925 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATACT TAGGTAATGA AGAGACTTTG GTTGAATTAC CAGCTGTTGA TTATTTAGAG
AAAAATTTAG GCTATTCTTT TATTCATGGT AAGGATTTAA CTCCTGAAAG TGGGGAAAGA
GATTCTTTAT CTGATGTTGT TTTGATTAAT AGATTAAGGG ATGCTTTAAA AAGATTAAAT
CCATGGATGA ATGAAGAAAA TTTAGATAGA GCAATTAGAT ATATTTCTAG AGCAGATAAT
CTAGGAAGTG GTTTATTAGA GATAAATGAA AAGATATATG ATGCATTAGT AGATTTAACT
TTTACTGTTG AACAGGATTT ATTTGGGAAT GGTCAGAAAA AACCACAGAC AGTTCATTTT
ATAGATTGGA ATGATGTTGA TAATAATGAT TTTCTTGTCG TTAGACAGTT TGAAGTTCAA
ACTCTTTCAG GAAAGTCTAT ATTTCCTGAC ATAGTTATTT TTATTAATGG TATTCCAGTA
GTTGTTTTAG AAGCTAAATC ACCTTTTTTA GAAAAAGGAA ACAATGAATG TATTGGAAAA
AAACAAGCTT ATGAACAGTT AAGAAGATAT ATGAATGCTA GAGATGAGTC TTTAGGAGAA
GGAGCTCCAA AGCTATTCTA TACTAACTTT TTTACTGGAA TTTTAAATAG ATATAATGCT
TATGTTGGCA CTATAAGTTC AAGTTATAAT TACTATTTAG AATGGAAAGA CCCATATCCA
TTTAAGCTTG AAGAAGTTGA AGATTATAAA AATTGTGGAC AAAATATACT CTTACAAGGA
TTTTTAGAAA AGAAAAATCT TTTAGATTTA ATGAGAAATT TTATAGTTTT TGAGGCAGAA
GATGGAGTTG TAATTAAAAA GGTTTGTAGA TATCAACAAT TTAGAGCTGT GAACAAAGCT
CTTAATAAAA TTAAAAATGG AAAAGATAAG ATTTCAAGAG GTGGAGTTGT TTGGCATACT
CAGGGGTCAG GTAAATCTTT AACTATGGTT TTCTTAGCTA GAAAGATTAA AAGAACACAA
GGATTAACAG ATTCTACAAT AGTTATAGTA ACAGATAGAA TTGACCTTGA TAAGCAAATA
GCAGGAACTT TTGAAAGAAC TTTAGGTAAA ATAACTACTC CTGTTAGAGC TGATACTATT
GATAAAATGA AAAAATTATT ATCAAATCCT CAACCACAAA TTATAATGAC TACTATTCAG
AAATTTCAAA GTGAAACTGA AGAAAAGGAA GTTATGCTTG ATGGAGAAAA TTTAACTCAA
AAATATGCTG TTGAGTACCC TGTTTTAAGC ACAAAACAAA ATATTATTGT ATTGGCTGAT
GAGGCTCATA GAAGTCAATA TAAGGACACC GCAGCTAATA TGAGAAAGGC ATTGCCTAAT
GCTGTTTTTA TCGGATTTAC AGGTACCCCA ATAGATAAAG AGGATAAATC AACACCAAGA
ACTTTTGGAG GATATATAGA TAAATATTCT ATTAAACAAG CAGTAGATGA TGGTGCTACT
GTTAAGATTG TTTATGAAGG TAGAAGACCA GACTTACAAG TAATAGGAGA ATCTTTAGAA
GAATTATTTG ATGAAGCTTT TTCAGATAGA ACTGATGAAG AAAAAGAAGC TATTAAACAA
AAATATGCCA ATAAAAAAAC TGTTGTTGAA TCAGAAGATA GGATTGATGA AATTGCTAAA
GATTTATTAA AACACTATAA AGAACAAATA CTTCCTAATG GATTTAAAGC ACAGATTGTA
TGTGTATCAA GAGAAGCTTG TGTAAAATAT TATGATGCTT TAAATAGACA TATGAAAGAA
ATATTAGGTG AAGGATTTGA AGCTCAAGTG ATATTCTCAG GAGATAATAA TGATAAACCT
CACTTAAAAA AGCATTTTAC TACAAAATCA GAGCAAGAAA AGTTAATAAA AAGATTTAAG
AAACCTATAA ATAAGGACAA GTTAACATTT TTAATAGTCA AAGATATGTT GTTAACAGGA
TTTGACGCAC CTATTGAACA AGTTATGTAT CTTGATAGAC CACTAAAAGA ACATACTTTA
CTTCAAGCTA TTGCAAGGGT TAATAGAACA TCAACAAGAG AAGTTGAGAG ACAACTTGAA
AATGGAGAAA TAGTAAAAGA AAATATTACA AAGCAATGTG GATACATAGT AGATTATTAT
GGTATTTCAA ATTACTTAGA AGATGCTTTA GCTATATTTG ATAAAGAAGA GCTGGGTAAA
CCTATGGAAT CTTTAGATGA TTTATATAAT GAAATGTTAT CTTATAGAGA ATCTATAATG
TCTATGTTTA GAGGTGTGGA TAAAAATAAT TTAGATGCTC TTGTGAATAA AATTGAGCCA
GAAGATAAAA GAGCTGAATT TGAATTAATG TATAGAAAAT TCTCAGGGGC AGTTGAAAGT
CTTTTACCAT CACATGTTGA TACAGAAATA TTAAATGATT TGAAATGGCT ATCATATATT
AGAGCAGCTG CTAAAGCTAA GTTTAGTCCA AGTGAATCAA TAGATATAGC TGATTGTGGA
GAAAAAGTTA GAGAAATAAT AGAAACTCAT TTAAAATCAC TAGGAGTTAG AAGTTGGATT
GAACCAATAA CATTATTTGA AAAAGATTTT AAAGATAAGA TAAACACTCT AAAATCAGAT
GAAGCTCAAG CATCTGCTAT GGAACATGCA ATTAAGCATA CAATTAATAT TAGAAGAAAA
GAAAATCCAG TTTATTATGC TTCTCTATTG GAAAGACTTC AAAAGATATT AGATGAAACA
AAAAATGATT GGATTGAAAG AAAAATAAGA TTAAATAAGT TTATTAAGAA TCATGTTGAA
GATGGAGCTG CTAATGAGGC TAGTGATTTA GGACTAGATG AGAAAGAGTT TGCGTTCTTT
AAAGTAGTAA AAAAATACTT AGAAGATGGT GGAGAAGAAT TCATAGCTAA GGAAGAAAAA
GCATGTTATA TATCAGATGA AACAGTAGAA CTTTCAAAGC AAATTGCTAA AGAAGTTAAA
GAAATTGCTG AAAATGCAGG AATCGATTGG GTTACAACTC CGTATAAAAC TAATAATGTT
GAAAGAGAAA TAAAGTTAAT GCTAATTAGA AAATATGCTA AGAAAATTCC TAGAAATATT
AGAGAAAAAT TAATGGAACC ACTTCTAAAT TTAGCCAAGA TACATTTTGA TATAGTTTAA
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| Protein sequence | MSYLGNEETL VELPAVDYLE KNLGYSFIHG KDLTPESGER DSLSDVVLIN RLRDALKRLN
PWMNEENLDR AIRYISRADN LGSGLLEINE KIYDALVDLT FTVEQDLFGN GQKKPQTVHF
IDWNDVDNND FLVVRQFEVQ TLSGKSIFPD IVIFINGIPV VVLEAKSPFL EKGNNECIGK
KQAYEQLRRY MNARDESLGE GAPKLFYTNF FTGILNRYNA YVGTISSSYN YYLEWKDPYP
FKLEEVEDYK NCGQNILLQG FLEKKNLLDL MRNFIVFEAE DGVVIKKVCR YQQFRAVNKA
LNKIKNGKDK ISRGGVVWHT QGSGKSLTMV FLARKIKRTQ GLTDSTIVIV TDRIDLDKQI
AGTFERTLGK ITTPVRADTI DKMKKLLSNP QPQIIMTTIQ KFQSETEEKE VMLDGENLTQ
KYAVEYPVLS TKQNIIVLAD EAHRSQYKDT AANMRKALPN AVFIGFTGTP IDKEDKSTPR
TFGGYIDKYS IKQAVDDGAT VKIVYEGRRP DLQVIGESLE ELFDEAFSDR TDEEKEAIKQ
KYANKKTVVE SEDRIDEIAK DLLKHYKEQI LPNGFKAQIV CVSREACVKY YDALNRHMKE
ILGEGFEAQV IFSGDNNDKP HLKKHFTTKS EQEKLIKRFK KPINKDKLTF LIVKDMLLTG
FDAPIEQVMY LDRPLKEHTL LQAIARVNRT STREVERQLE NGEIVKENIT KQCGYIVDYY
GISNYLEDAL AIFDKEELGK PMESLDDLYN EMLSYRESIM SMFRGVDKNN LDALVNKIEP
EDKRAEFELM YRKFSGAVES LLPSHVDTEI LNDLKWLSYI RAAAKAKFSP SESIDIADCG
EKVREIIETH LKSLGVRSWI EPITLFEKDF KDKINTLKSD EAQASAMEHA IKHTINIRRK
ENPVYYASLL ERLQKILDET KNDWIERKIR LNKFIKNHVE DGAANEASDL GLDEKEFAFF
KVVKKYLEDG GEEFIAKEEK ACYISDETVE LSKQIAKEVK EIAENAGIDW VTTPYKTNNV
EREIKLMLIR KYAKKIPRNI REKLMEPLLN LAKIHFDIV
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