Gene CPF_2552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_2552 
Symbol 
ID4202901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp2811903 
End bp2812880 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content33% 
IMG OID638083419 
Productoligopeptide/dipeptide ABC transporter, ATP-binding protein 
Protein accessionYP_696942 
Protein GI110800549 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGAAAAA CATTAGTAGA ATTTAAAAAT CTTGAAACTC ACTTTCATAC AGGTGAGGGA 
ATTGTTAAAG CAGTAAATAA CGTTAGTTTT AAAATAAAAG AAGGGGAGAC AGTTTGTGTA
GTTGGAGAAT CTGGATGCGG AAAATCTGTT ACTGCCATGT CTCTTATGAG ATTAATACCA
AGTCCTCCTG GAAAAATAGT TGGAGGAGAA ATTCTTTTTG AGGGAAAAGA TGTTTTAAAG
TTCACAGAGC AAGAACTTAT GGATATGAGA GGAAATGATA TATCAGTTAT TTTCCAAGAA
CCTATGACAT CATTAAACCC AGTATTTAAA ATAGGAGATC AAATTTGTGA AGCAATAATT
CTTCATCAGC ATTTATCAAA AGAAGAAGCT GAAAAGAAAG CTATAGAAGT TTTAAAAATA
ATTGGTATAG CTAGAGCAGA AGAAATAATG AAATCTTATC CTCACGAATT ATCAGGAGGA
ATGAGACAAA GAATTATGAT TGCTATGGCA GTTTGTTGTA ATCCTAAGCT TTTAATAGCT
GACGAGCCTA CAACTGCCCT TGATGTTACA ATTCAAGCAC AAATTCTAGA TCTTATGAGA
GATATTAAAG AGAAATTAAA TACATCAATA TTATTAATAA CACATGACTT AGGAGTAGTT
GCTGAAATGG CTGACTATGT TGTTGTAATG TATGCTGGTA AGGTTATTGA GGAAGCTCCA
GTTTTAGAGC TTTTTAAAAA TCCTCTTCAT CCATATACAC AAGGTTTACT TAAATCTAAG
CCATCAGTTA ATGGAAATGA AACTAGACTT TATTCAATAC CAGGACAAGT TCCTAATCCG
GTAGGTATGC CAGATAATTG CTACTTCAAT GAGAGATGTG ATAGATGTAT GGAAAAATGT
AAGGATGTTC AACCTACTCT TGTTGATGTA GGAAATAGAC ATAAAGTTTC ATGCTGGTTA
TATAAGGAGG GAAAGTAG
 
Protein sequence
MGKTLVEFKN LETHFHTGEG IVKAVNNVSF KIKEGETVCV VGESGCGKSV TAMSLMRLIP 
SPPGKIVGGE ILFEGKDVLK FTEQELMDMR GNDISVIFQE PMTSLNPVFK IGDQICEAII
LHQHLSKEEA EKKAIEVLKI IGIARAEEIM KSYPHELSGG MRQRIMIAMA VCCNPKLLIA
DEPTTALDVT IQAQILDLMR DIKEKLNTSI LLITHDLGVV AEMADYVVVM YAGKVIEEAP
VLELFKNPLH PYTQGLLKSK PSVNGNETRL YSIPGQVPNP VGMPDNCYFN ERCDRCMEKC
KDVQPTLVDV GNRHKVSCWL YKEGK