| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2494 |
|---|
| Symbol | |
|---|
| ID | 4203306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2765439 |
|---|
| End bp | 2766818 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 638083359 |
|---|
| Product | serine protease |
|---|
| Protein accession | YP_696908 |
|---|
| Protein GI | 110801229 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATT TCAATAAAAA AGATGAAAAC TTAAATGACT ACTTTGGTTT TGATGATAAA
GAAAATAAAA CTTTAGATTC AGATAAGGAC ATAAAAGACA AAGAAAATAT AGAGTCAAAT
AATGATACGA AGCAAACTAA CATAGATGAA ACTCAGCAAT TAAATATAGA TAATGAAATT
AATTCAAAAG ATGAAGTTAA AAAAGAGGAT GATAAAAACT TCTCTGACGT AAAATCAAAA
AGCTCAAAAG AATCTAATGA TAATAGTAAA AACAAAAAAG TAAAGAAAAA GAGTGGATTT
AAAAGAGGAA TAGCTCTAGT AGCAGGTGCT GTCATAGTTG CTATAATAGG AGGAGCTATA
GGTGCTGGCG GAGTTTATTA TGCTTTTAAA AATAGCATAC CAGTAAGTAC ACTAGAGAAT
AATAGTAATA CCTCAGTTAA TCCACCAGCC TTTAAAGGGG AAGATGGAGC ATTAACTGTT
CCACAAGTAG TTGAAAAAGT TACACCTGCC GTTGTAGGAG TATCCACAAA GAGCTTAGTA
AGAGACCAAT TCTTTAATGT AAAAGAACAA GAAGGATTAG GATCTGGATT TATAATAAAT
GAAGATGGAT ATGTAGTTAC AAATTACCAT GTTATAAATG GAGCTCAAGA AGTTAAAGTA
ATATTCTCTG ATGGAAAAGA AGTAAATGCT AAGGTTGTAA ATTACGATGC AGAAAGAGAT
ATCGCAGTAA TAAAAATAAC AGACGATGTT AAAATGCCTG GAATAGCACA ATTAGGAGAT
TCATCTACAG TTAAAGCTGG TGAAGAAGTA ATTGCTATAG GAAATCCTCT AGGAAAAGAA
TTTAGTTCAA CAGTAACTAA GGGTATAGTA AGTTCACCAA ATAGAAAGAT GAAGACTGAA
AACGGAAATG TATTAGATTA TATACAAACA GATGCAGCTA TTAACCCTGG TAATAGTGGT
GGTCCATTAA TAAACTCTAA GGGAGAAGTT ATTGGAATAA ACACTGCTAA AAAAGTTGGT
GAAGATATTG AAGGTATAGG ATTTGCAATT CCTATAAATG AAGTTAAAAC AAGATTAGGT
TCATTATCAA AGCCAATATT AAAACTTGGT ATTACAGCTA GAACTGTTAC TCCAGAATTA
GCAAAAGAAA ATAAGCTAGA AGAAGGAGTT TATGTTGTAG GAGTACAAGA GTTTAGTCCA
GCAGAAAAAG CAGGATTAAA AATAGGTGAC TTAATAGTTG AATTTGGTGG AAAAAGAGTA
AAAACTTTAG AAGAATTAAA TCAAGTTAAA AGTCAATATA ATGATGGAGA TTCAGTACCA
GTTGAAATAA TTAGAGATGG TAAGAAAGTA AACTTAAATT TAACATTAGT TGCTAATTAG
|
|---|
| Protein sequence | MSDFNKKDEN LNDYFGFDDK ENKTLDSDKD IKDKENIESN NDTKQTNIDE TQQLNIDNEI
NSKDEVKKED DKNFSDVKSK SSKESNDNSK NKKVKKKSGF KRGIALVAGA VIVAIIGGAI
GAGGVYYAFK NSIPVSTLEN NSNTSVNPPA FKGEDGALTV PQVVEKVTPA VVGVSTKSLV
RDQFFNVKEQ EGLGSGFIIN EDGYVVTNYH VINGAQEVKV IFSDGKEVNA KVVNYDAERD
IAVIKITDDV KMPGIAQLGD SSTVKAGEEV IAIGNPLGKE FSSTVTKGIV SSPNRKMKTE
NGNVLDYIQT DAAINPGNSG GPLINSKGEV IGINTAKKVG EDIEGIGFAI PINEVKTRLG
SLSKPILKLG ITARTVTPEL AKENKLEEGV YVVGVQEFSP AEKAGLKIGD LIVEFGGKRV
KTLEELNQVK SQYNDGDSVP VEIIRDGKKV NLNLTLVAN
|
|---|
| |