| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2197 |
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| Symbol | secD |
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| ID | 4202501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2437909 |
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| End bp | 2439168 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 638083062 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_696621 |
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| Protein GI | 110799636 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCAA AATTAGGTAG CTTCATATTA TTTTTTATCT CCATAGCAGT GATAAGTTTT
TTAGCTCTAG CAGGGTTCAA AGGATTTACA TTAGGGGACT ATCAATTTAA AACGTTTAAT
GAGGTTATAA CTAAAGGATT GGATTTACAA GGTGGAGTTT CTGTTCTTAT GGAAATCCAA
AGTAATGACG TAACAGTAGA TCAATTAAAC ACAACAAAGG AACTTCTATC TTTAAGGGTT
AATAAGGTTG GAGTTTCAGA AACTGTAGTA ACAACAGAGG GAAATAATAG AATAAGAATT
GATATTCCAG GACAATACGA TTCAGGAACT ATAGTGGATT CTCTTCAAAA AACAGGGGAG
TTAACATTTG TAGGGCCTGA GGATGATGTT ATTTTAACAG GTAAAGATGT TGAAAAGTCA
AGTGTATATA TAGACCCTCA AACAGGTAAG CCAGTTATAA AATTAGAGCT TAACGAAGAA
GGTAAGCAAA AGTTTGCTGA GGCAACAAAA AAATATAAAG GCCAAAAAAT AGCTATAAAA
ATGGATAATG AAACATTAAC AGATCCAGTA GTAAATGACA TAATTTCTAA TGGTGAAGCT
ATTATTTCAG GAAATAGATC AATGGAAGAA GCTGAAAAGG TATCTGGAAT AATAAATGCT
GGTGCATTAC CAGTTCCAGT TAAGGCAGTT TCAGTTGAGA CTGTAGGTGC TCAATTAGGT
GCAAATGCTC TTCCAAATGC TCTGAAAGCA GGAGCAATAG GTGTAGCTAT AATATTCTTA
TTTATGATAC TATACTATAG AGTTCCAGGA TTCATTGCAT GTATGTCACT AAGTGTTTAT
ATATTATTAG TGCTTTATAT ATTTGCATTA GTAGGAGTAA CTCTTACTTT ACCAGGTATA
GCAGCTTTCT TATTAACAGT AGGTATGGCA GTAGATGCTA ACGTACTTAT ATTTGAAAGA
ATCAAAGAAG AACTTGGAAA TGGTAGAAGT ATAACATCAG CTATGAAAAT AGGTTTTAGC
AATGCTTTAA GATCAATAAT GGATTCTAAT ATAACAACCC TTATTGCTGG TTTAGTATTA
TACTTCTTTG GATCAGGACC AGTTAAAGGA TTTGCTTTAA CATTATTAAT AGGTATTGTA
ATAAGTATGT TTACCGCTAT AATAATGACA AGATTCTTTA TGAATTTAGG ATTCAACATG
GGAATATTAA ATAAGCCTTC AATGTTTGGT CGTATAAAAG GAGGTAGACA TAATGCTTAA
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| Protein sequence | MKSKLGSFIL FFISIAVISF LALAGFKGFT LGDYQFKTFN EVITKGLDLQ GGVSVLMEIQ
SNDVTVDQLN TTKELLSLRV NKVGVSETVV TTEGNNRIRI DIPGQYDSGT IVDSLQKTGE
LTFVGPEDDV ILTGKDVEKS SVYIDPQTGK PVIKLELNEE GKQKFAEATK KYKGQKIAIK
MDNETLTDPV VNDIISNGEA IISGNRSMEE AEKVSGIINA GALPVPVKAV SVETVGAQLG
ANALPNALKA GAIGVAIIFL FMILYYRVPG FIACMSLSVY ILLVLYIFAL VGVTLTLPGI
AAFLLTVGMA VDANVLIFER IKEELGNGRS ITSAMKIGFS NALRSIMDSN ITTLIAGLVL
YFFGSGPVKG FALTLLIGIV ISMFTAIIMT RFFMNLGFNM GILNKPSMFG RIKGGRHNA
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