| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2175 |
|---|
| Symbol | valS |
|---|
| ID | 4203131 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2412522 |
|---|
| End bp | 2415164 |
|---|
| Gene Length | 2643 bp |
|---|
| Protein Length | 880 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638083040 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_696599 |
|---|
| Protein GI | 110801210 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAATA AGAATATTTC TACAACGTAT AATCCTAAAG AGTTTGAAGA AAGACTTTAT
AGCAATTGGC AAGAAAAGAA GTATTTTACT CCTGTAATAG ATAAGAGTAA AAAACCTTAC
ACTATAATAA TGCCACCACC AAATATAACT GGTAAATTAC ACTTAGGTCA TGCACTTGAT
AACACACTTC AAGATATGCT TATAAGATTT AAGAGAATGC AAGGATATTG CACTTTATGG
TTACCAGGAC AAGACCATGC TAGTATAGCA ACTGAGGTTA AAGTTGAAAA TGAACTTTTA
AAAGAAGGTC TTTATAAGAA AGAAATGGGA AGAGAAGCTT TCTTAGAAAA AGTTTGGGAA
TGGACAGATG AATATAGAGA AAGAATAAGA GAGCAACTTA AGAAAATGGG ATGCTCAGCT
GACTTTACAA GAGAAGCTTT CACAATGGAT GAAAACTTAA GTAAGGCAGT AAGACATGTA
TTCGTTAAAT TATATAAAGA AGGCTTAATA TACCAAGGAA ACAGAATAAC TAACTGGTGT
CCTAAATGTC AAACTGCTTT ATCAGATGCT GAGATAGAGT ATGAAGAAAA AGAAGGAAAC
TTCTGGCATA TTAAATACCA AGTAGTTGGT TCAGAGGAAT TCTTAGAAAT AGCTACAACT
AGACCTGAAA CTTTACTTGG AGATAGTGCC GTAGCAGTTA ACCCAAGTGA TGAAAGATAT
GCTCACTTAG TAGGTAAAAT GTTAAAGTTA CCTTTAACTG ATAGAGAAAT ACCTGTAATC
GCTGATGACT ATGTTGACGT AGAATTTGGA ACAGGAGCAG TTAAAATAAC TCCAGCTCAT
GATCCTAATG ACTTTGAAGT TGGTAAGAGA CATAACTTAC CACAAATAAG AGTTATGGAT
GATAGCGGTG TAATAAACCA CTTAGGTGGA AAATATAAAG GCTTAGATAG ATATGAGGCT
AGAAAACAAA TGGTTGCTGA CTTAGAAGAG TTAGGATTAT TAGTTAAAAT AAAACCTCAT
ACTCACAATG TTGGTACTCA CGATAGATGT GGTACAGTTG TAGAGCCAAT CATATCAAAA
CAATGGTATG TAAAAATGCA ATCATTAGCA GATCCTGCTA TAGAGGTTGT TAGAAACAAA
GGAACTAAAT TCGTTCCTGA AAGATTTGAA AAGACTTACT TCAACTGGAT GGAAAACATT
CAAGATTGGT GTATTTCAAG ACAATTATGG TGGGGACACA GAATACCAGT ATTCTACTGT
AAAGATTGTG GAGAAATCAT GGTTGAATTA GAGGATCCAA CTAAGTGCTG TAAGTGTGGA
TCAGAGAACA TAGAACAAGA TAAAGACGTT CTAGATACTT GGTTTAGTTC AGCTTTATGG
CCTTTCTCAA CTTTAGGATG GCCTGATAGA ACTGACGATT TAGAGTTCTT CTATCCAACA
TCAACATTAG TTACAGGATA CGATATAATA TTCTTCTGGG TTGCTAGAAT GATATTCTCA
GGTATCCACA ACATGGGAGA AACTCCATTT GATACAGTAT TAATTCACGG TATCATAAGA
GATGCTCAAG GAAGAAAAAT GAGTAAATCT TTAGGAAATG GTGTTGATCC ATTAGAAGTT
ATAGATGAAT ATGGTGCTGA TGCATTAAGA TTCATGTTAG TAACAGGAAA TGCTCCAGGA
AATGATATAA GATACATTCC TGAAAGAGTT GAAGCTGCAA GAAACTTTGC TAATAAGATT
TGGAATGCTT CAAGATTCGT TATGATGAAC TTAGATAGAG AGCTTATGGA TAAATATAAA
GACTGCAAAG AGTATAGCTT AGCAGATAAG TGGATATTAT CAAGAATGAA CTCATTAATC
AAAGAAGTTA CAGAAAACAT GGAAAAATAT GAGTTAGGAA TAGCTCTTCA AAAAGTACAT
GATTTCTTAT GGACAGAGTT CTGTGATTAC TATATAGAAT TAGTTAAACC AGTATTATAT
GGTGATGATG AAAAAGCTAA GGGAGTAGTA TTTAACGTAC TTTACACTGT ATTAAATACA
GGATTAAAAT TATTACACCC AGTAATGCCT TTCATAACTG AGGAAATATA TACTCACTTA
AGCACAGAAA CTGAGTCAAT TACAATAGCT ACTTGGCCAA CATATGATGA AGCTTTAAAT
AACGAAAAAG CTGAGAAGGA CATGACATTC ATAATGGAAG CTATAAGATC ATTAAGAAAC
TTAAGAGCTG AAATGAATGT ACCACCTTCA AGAAAAGCTA AGGTTATGGC TTACGCTTCA
GAAGAGGCTA AAGATGCATT TATAAATGGT GGAGCTTACT TAGAAAAGCT TGCATCTGCA
TCAGAAGTTA CTTTCTTAGA TAATAAGGAT AACTTAGATA ATAACTTAGT ATCAGTAGTT
GTTAAGGGTG GAGAATTATT CTTACCATTA CTTGACTTAG TTGATAGAGA AAAAGAGTTA
GAAAGATTAA ATAAAGAGAA AACTAAACTT GAAGGAGAAA TCTTAAGAGT TGAGAAGAAA
CTTTCTAATG AAAGATTCGT AAGCAAAGCA CCAGAGGCTG TTGTTAATGA AGAAAGAGCA
AAAGGTGTTA AATACAAAGA AATGTTAGAG GCTGTTCTAG AAAGAATAGA AGCTTTACAA
TAA
|
|---|
| Protein sequence | MDNKNISTTY NPKEFEERLY SNWQEKKYFT PVIDKSKKPY TIIMPPPNIT GKLHLGHALD
NTLQDMLIRF KRMQGYCTLW LPGQDHASIA TEVKVENELL KEGLYKKEMG REAFLEKVWE
WTDEYRERIR EQLKKMGCSA DFTREAFTMD ENLSKAVRHV FVKLYKEGLI YQGNRITNWC
PKCQTALSDA EIEYEEKEGN FWHIKYQVVG SEEFLEIATT RPETLLGDSA VAVNPSDERY
AHLVGKMLKL PLTDREIPVI ADDYVDVEFG TGAVKITPAH DPNDFEVGKR HNLPQIRVMD
DSGVINHLGG KYKGLDRYEA RKQMVADLEE LGLLVKIKPH THNVGTHDRC GTVVEPIISK
QWYVKMQSLA DPAIEVVRNK GTKFVPERFE KTYFNWMENI QDWCISRQLW WGHRIPVFYC
KDCGEIMVEL EDPTKCCKCG SENIEQDKDV LDTWFSSALW PFSTLGWPDR TDDLEFFYPT
STLVTGYDII FFWVARMIFS GIHNMGETPF DTVLIHGIIR DAQGRKMSKS LGNGVDPLEV
IDEYGADALR FMLVTGNAPG NDIRYIPERV EAARNFANKI WNASRFVMMN LDRELMDKYK
DCKEYSLADK WILSRMNSLI KEVTENMEKY ELGIALQKVH DFLWTEFCDY YIELVKPVLY
GDDEKAKGVV FNVLYTVLNT GLKLLHPVMP FITEEIYTHL STETESITIA TWPTYDEALN
NEKAEKDMTF IMEAIRSLRN LRAEMNVPPS RKAKVMAYAS EEAKDAFING GAYLEKLASA
SEVTFLDNKD NLDNNLVSVV VKGGELFLPL LDLVDREKEL ERLNKEKTKL EGEILRVEKK
LSNERFVSKA PEAVVNEERA KGVKYKEMLE AVLERIEALQ
|
|---|
| |