| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2167 |
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| Symbol | |
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| ID | 4201015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2403633 |
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| End bp | 2404409 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 26% |
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| IMG OID | 638083032 |
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| Product | polysaccharide deacetylase family protein |
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| Protein accession | YP_696591 |
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| Protein GI | 110801155 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | [TIGR02764] polysaccharide deacetylase family sporulation protein PdaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000111858 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGAAAAAAA ATAATAATTT TTTTATTTGT AAAAACTTTA TTACTACCAT TACTTTAGTT
GTTATTATTG CCATATTTAC ATTGCCTATT AATGTTTTTG CAAAAGATAA TAAGCCAATT
CATTGTGTGG ATAGAGAGGA TAAAAAAATT TCTCTGACCT TTGATGTGAA TTGGGCAGAA
AATGATTATT TATATGAAAT TTTAGATTTA CTAGATGAAA ATAATGTAAA AGCTACATTT
TTTATAATGG GTAAGTGGGT AATATATCCT GAAGGTAATA GAGAAAAGTT AGTAGAAATT
CATAAGAGAG GACACGAAAT AGGAAATCAT AGTTATGTAC ATCCTGATTT TAAGAATATA
GGAAAAGAGA GAATAATTGA AGAGGTTAAA AAAACAGAAG AAATAATAGA AAAGGAAGTT
GGAGTAAAGA CTAATTTATT TAGATTTCCT AGTGGTTCAT ATAGCCAAGA AAGTTTAAGT
GTTATTCATG GATTACAATA TAAAAGTATA CAATGGGATG TTGATAGTGT GGATTGGAAA
GGAGAGAGTA AAGAGAGGGA ATATAAAAAG GTAATTGACA ATGTAAAAGG TGGGTCAATA
CTTTTATATC ATAATAATGG TAAATATACT GTAGAGAATC TTAAGGAAAT AATTCCAAAA
TTAAAATCAG AAGGATATGA ATTTGTTAAA ATAAGCGACA TAATATATGA AAATAGTTAC
GAAATAGATG ACAATGGAAA ACAATTGTTA ATTAAAACGA AACAAAATAA TAGTTGA
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| Protein sequence | MKKNNNFFIC KNFITTITLV VIIAIFTLPI NVFAKDNKPI HCVDREDKKI SLTFDVNWAE
NDYLYEILDL LDENNVKATF FIMGKWVIYP EGNREKLVEI HKRGHEIGNH SYVHPDFKNI
GKERIIEEVK KTEEIIEKEV GVKTNLFRFP SGSYSQESLS VIHGLQYKSI QWDVDSVDWK
GESKEREYKK VIDNVKGGSI LLYHNNGKYT VENLKEIIPK LKSEGYEFVK ISDIIYENSY
EIDDNGKQLL IKTKQNNS
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