Gene CPF_2108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_2108 
Symbol 
ID4201468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp2338929 
End bp2339588 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content27% 
IMG OID638082973 
Producthypothetical protein 
Protein accessionYP_696537 
Protein GI110798840 
COG category[R] General function prediction only 
COG ID[COG0325] Predicted enzyme with a TIM-barrel fold 
TIGRFAM ID[TIGR00044] pyridoxal phosphate enzyme, YggS family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000109011 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGATATAA AAGAAAATTT AACAAAATTT ACAGAAAAAA TTCCAAGTAA CGTTCAACTT 
ATTGCTGTAT CTAAAACAAG AACTATTGAA GAAATGGAAG AGGCCTATGA ATTTGGTATT
AGAAAATTTG GTGAAAATAA GGTTCAAGAA ATAATAAGAA AATTTGATGA GTTTCACCAA
GATGTAGAAT GGCATTTAAT AGGACATCTT CAAACTAATA AGGTGAAGTA TATAGTTGAT
AAAGTTCATC TTATACAATC ATTAGATAGT ATTAAATTAT TAAAAGAAAT AGAAAAGGTA
TATGGTAAAC ATAATAAAAT TGCCAATACT TTAATTCAAG TTAACATAGG AAGAGAAGAA
CAAAAGTATG GTATCTTGGA AGAAGAGTTA GATGAACTTA TAGAAGCTAT AGAAGCTTGT
AACAATGTTA ATGTTTTAGG TATTATGACT ATAATTCCAA AGGGAACAGA AGAAGAATGT
AGAAAGTACT TTAGCAAAAC TCATAAGCTT TTTTGTGAAT TAAAAGAGAA AAAGTTTAAG
AATATAAAAA TGGATATACT TTCAATGGGA ATGTCAGGTG ATTATGAGAT TGCTATTGAA
GAAGGCAGCA ATATGGTTAG AATTGGCCAA GGAATTTTTG GCAAAAGATT ATATAAATAA
 
Protein sequence
MDIKENLTKF TEKIPSNVQL IAVSKTRTIE EMEEAYEFGI RKFGENKVQE IIRKFDEFHQ 
DVEWHLIGHL QTNKVKYIVD KVHLIQSLDS IKLLKEIEKV YGKHNKIANT LIQVNIGREE
QKYGILEEEL DELIEAIEAC NNVNVLGIMT IIPKGTEEEC RKYFSKTHKL FCELKEKKFK
NIKMDILSMG MSGDYEIAIE EGSNMVRIGQ GIFGKRLYK