Gene CPF_2073 details

Gene Information

• Locus tag: CPF_2073
• Symbol: dxs
• ID: 4201328
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: -
• Start bp: 2312254
• End bp: 2314113
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 30%
• IMG OID: 638082938
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_696502
• Protein GI: 110799458
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.763377
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGAAG TTCTACAGAG AATAACTGAT CCTAAAGAAA TAAAGGATTT AGATGAGAAA 
GAATTAGAAA TATTAGCTGA AGATTTAAGA GAATTTTTAA TTGAAAGTGT TTCAAATACT 
GGGGGACATT TTGCTTCAAA CTTAGGAGTT ATTGATTTAA CAGTAGCTTT GTTTAAAAAT 
TTTGATTTTA GTGAAGATAG AATAATATGG GATGTTGGAC ATCAATCTTA TGCTTATAAG 
ATATTAACAG GAAGAAAAGA TAAATTTAAT ACTTTAAGAC AATATGGTGG ATTGTGTGGA 
TTTCCTAAGA GAACAGAAAG TGAATATGAT TTTTTTGCCA CTGGACATAG TAGTACATCA 
CTATCTTCAG CAGCAGGTAT GGCTAGAGCA CAGAGGCTAC TTGGAAAAGA TAATAAGGTT 
ATAGCAGTTA TAGGTGATGG AGCCTTAACT GGAGGTATGG CCTTAGAAGC CTTAAATGAT 
ATTGGATATA GAAAAGATAA TCTTATAATA ATATTAAATG ATAATCAAAT GTCTATATGT 
AAAAATGTTG GAGGACTTGC AACCTATTTA AATAAGCTTA GAATGGGTGT AGGTTATAAT 
AAATTAAAAT CAGATATTGG ATCAACTTTA GATACAACTT CTTTTGGGAA AAGAGTAAAG 
AACTCTCTTT CAAAATTAAA AGATGGTATT AAAAAAATTG TTGTACCAAG TATGTACTTT 
GAAGATATTG GATTAAAATA TTTTGGTATA GTAGATGGAC ATAATATTAG AGAATTAAAT 
GAAGTTTTAA GCATAGCTAA AAATATAAAA GGACCAGTTA TAATACATAC AGTTACTAAA 
AAAGGAAAAG GCTATGAATT AGCAGAAAAA AATCCTAATA AATATCATGG AGTATCTCCT 
TTTGATTTAG GGGAAGGAGT AATTTCAAAG TTTGCAAGTA GAAATTATTC TTCTACCTTT 
GGAGAAGAAA TGATTAAATT AGCTAAAAAT GATGACAAAG TTGTTGCAAT TACTGCTGCT 
ATGCCAGATG GAACAGGGTT AAAGGAATTT AGAGAAGAAT TTCCTGATAG ATTTTTTGAT 
GTAGGAATAG CAGAACAACA CGCTGTTACC TTAGCTGCTG GAATGGCAGC AGAGGGTTTA 
AAACCATTTT TTGCGGTTTA TTCCACTTTC CTACAAAGAG CTTATGACCA AGTTTTACAT 
GATGTATGCA TACAAAAGCT ACCTGTTACA CTTTGTTTAG ATAGAGCTGG CTTAGTTGGA 
GAAGATGGAG AAACTCATCA AGGTATATTC GACATTTCAT TTTTATCTCC AATGCCTAAT 
ATGACTATTG TTGCACCTAA GTGTATAGAT GAAATGGAAG TTATCTTAAA ATGGGCAAGT 
AATTTTAATG CACCTTTAGC TATAAGATAT CCAAGAGGTG GAGATATTGA TGTTAATTTA 
AAACCATTAA GTAAAATAGA ATATGGAAAA TGGGAAAAGG TTCAAGAGGG AGATAAAATA 
GCAATAGTTG CTACTGGTAA AATGGTTCAA CATGCTATGA TTGCTGCACA AAAAATAAAA 
GAAGAAAAAA ATATAGATAT TTTAATTATA AATGCAACCT TTATAAAACC AATAGATAAA 
GAATTATTAA ATTCCTTATC AAAGGATGGA TTTAAGATTG TAACTATTGA AGATAATATT 
AAAAAAGGTG GCTTTGGAGA AGGCGTTCTA GAGTATTTAA ATGAAATTGG ACATAAAGAA 
AAAATTGTTA CATTAGCATT TAATGATAAG TTTATAGAAC ATGGTAAGCC TGATATTTTA 
TATAAAATTA ATGGGTTAGA TGCAGAGGGA ATAAAAAACA CATTAATTGA ATTACTTTAA 

 

Protein sequence

MSEVLQRITD PKEIKDLDEK ELEILAEDLR EFLIESVSNT GGHFASNLGV IDLTVALFKN 
FDFSEDRIIW DVGHQSYAYK ILTGRKDKFN TLRQYGGLCG FPKRTESEYD FFATGHSSTS 
LSSAAGMARA QRLLGKDNKV IAVIGDGALT GGMALEALND IGYRKDNLII ILNDNQMSIC 
KNVGGLATYL NKLRMGVGYN KLKSDIGSTL DTTSFGKRVK NSLSKLKDGI KKIVVPSMYF 
EDIGLKYFGI VDGHNIRELN EVLSIAKNIK GPVIIHTVTK KGKGYELAEK NPNKYHGVSP 
FDLGEGVISK FASRNYSSTF GEEMIKLAKN DDKVVAITAA MPDGTGLKEF REEFPDRFFD 
VGIAEQHAVT LAAGMAAEGL KPFFAVYSTF LQRAYDQVLH DVCIQKLPVT LCLDRAGLVG 
EDGETHQGIF DISFLSPMPN MTIVAPKCID EMEVILKWAS NFNAPLAIRY PRGGDIDVNL 
KPLSKIEYGK WEKVQEGDKI AIVATGKMVQ HAMIAAQKIK EEKNIDILII NATFIKPIDK 
ELLNSLSKDG FKIVTIEDNI KKGGFGEGVL EYLNEIGHKE KIVTLAFNDK FIEHGKPDIL 
YKINGLDAEG IKNTLIELL