| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2062 |
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| Symbol | pdp |
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| ID | 4203206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2301785 |
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| End bp | 2303086 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 638082927 |
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| Product | pyrimidine-nucleoside phosphorylase |
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| Protein accession | YP_696491 |
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| Protein GI | 110799911 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGAATGT ATGATTTAAT ATTAAAAAAG AGAAATGGTG GGGAATTAAG CACTGAAGAA
ATAAACTTTT TTGTTGATAA ATATACAAAT GGTGAAATAC CAGATTATCA AGTAGCAGCC
TTATTAATGG CTATATATTT CCAAAAAATG AATAAGAGAG AAACTTCAGA TTTAACTATG
GCTATGGTTA ATTCAGGAGA TATATTAGAT TTAAGTGAAA TACACGGTAT AAAAGTAGAT
AAGCATTCAA CTGGTGGGGT TGGTGATACT ACTACTTTAG TTTTAGGACC TATGGTTGCA
GCTTTAGGAA TTCCTGTAGC TAAAATGTCA GGAAGAGGTC TTGGACATAC TGGTGGAACA
ATAGATAAAT TAGAAAGTTT TGATGGATTC TCAGTAGAAA TGACTAAGGA TCAATTTATA
AATAATGTTA ATAATATAAA ATTAGCAGTT GGTGGACAAA CAGGAGATTT AGCTCCAGCT
GATAAAAAAC TTTATGCTTT AAGAGATGTT ACTGGAACTG TTGATAATGT ATCATTAATA
GCTTCAAGTA TTATGAGTAA AAAAATTGCT GCAGGCGCTG ATGCCATAGT ATTAGACGTT
AAGGTTGGAG ATGGAGCATT TATGAAAACT CCAGAGGCAG CTAGAGAACT TGCAACTGAA
ATGGTTGGAA TAGGTAAACA TGTTGGAAGA AATACTGTTG CCATAATTTC AGATATGGAT
CAACCTTTAG GATTTGCTAT AGGTAATGCA TTAGAAGTTA AAGAAGCCAT AGAAACTTTA
AGAGGAAATG GTCCTAAGGA TCTTTTAGAG CTTTGCTTAA CACTTGGAAG CAACATGGTT
GTTTTAGCAG GTGCTGCTAA AGATACTGAT GAAGCAAGAA AAATGTTAAT GGAAACAATA
ACTTCAGGAA AAGCAATTGA AAAATTAAAA GAATTTGTAA AAGCTCAAGG TGGAGATGCA
TCAGTTATTG ATGATATATC AAACTTCCAT AATGCTAAAT ATGTAATTCC AGTTAAAGCT
AATAAATCAG GGGTTGTAAG CAAAATACAT GCTGAAAACA TAGGATTAGT TGCTATGGAA
CTTGGAGCAG GAAGAGCTAC TAAAGAAAGT ATTATAGATT TAGCTGTTGG TATTGTTCTT
CAAAAGAAAA GAGGAGACAA AGTTAATGAA GGAGATATAA TAGCATATAT TCATGCTGAT
GATGAAGAAA AAGGTAAGAA AGCAGTAGAT GGAATATTAG CTAATTACGA AATATCAGAT
TCAGTAAAAG ATATTCCATT AATATATGAT ATAGTTAAAT AG
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| Protein sequence | MRMYDLILKK RNGGELSTEE INFFVDKYTN GEIPDYQVAA LLMAIYFQKM NKRETSDLTM
AMVNSGDILD LSEIHGIKVD KHSTGGVGDT TTLVLGPMVA ALGIPVAKMS GRGLGHTGGT
IDKLESFDGF SVEMTKDQFI NNVNNIKLAV GGQTGDLAPA DKKLYALRDV TGTVDNVSLI
ASSIMSKKIA AGADAIVLDV KVGDGAFMKT PEAARELATE MVGIGKHVGR NTVAIISDMD
QPLGFAIGNA LEVKEAIETL RGNGPKDLLE LCLTLGSNMV VLAGAAKDTD EARKMLMETI
TSGKAIEKLK EFVKAQGGDA SVIDDISNFH NAKYVIPVKA NKSGVVSKIH AENIGLVAME
LGAGRATKES IIDLAVGIVL QKKRGDKVNE GDIIAYIHAD DEEKGKKAVD GILANYEISD
SVKDIPLIYD IVK
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