| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1956 |
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| Symbol | topA |
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| ID | 4202010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2195749 |
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| End bp | 2197851 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 638082825 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_696389 |
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| Protein GI | 110800343 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial
[TIGR01057] DNA topoisomerase I, archaeal |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTCAAA AATTAGTAAT TGTTGAGTCA CCAGCTAAAG CCAAGACAAT AGAAAAATAT
TTAGGTAAAA ATTATGTAGT CGAAGCTTCC ATGGGACATG TAAGAGATTT GCCAAAAAGC
CAATTAGGCG TTGATATAGA AAATGAATAT AATCCTAAAT ATATAACAAT AAGAGGAAAA
GGTGAACTTT TAAGCAAACT TAGAAAGTTA GCTAAAAAAA GTGATAAGAT ATACCTTGCA
ACTGACCCTG ATAGAGAAGG GGAAGCTATA TCTTGGCACT TAGCTAATGT GCTTAAGATA
GATGAAAACG AGAATTGTAG AATAGAATTT AATGAAATAA CAAAGGATGC AGTTAAAAAT
TCAATAAAGC ATCCAAGAAA AATAAATTGT AATTTAGTAG ATGCTCAGCA AGCAAGAAGA
GTGTTAGACA GATTGGTTGG ATATGAAATA AGTCCACTTC TATGGAGAAA TGTAAAATGG
GGATTGAGTG CTGGAAGGGT TCAGTCAGCA GCATTAAAAC TTATATGTGA TAGAGAAGAA
GAAATAAAGA AGTTCAATCC AGAAGAGTAT TGGACTGTTG ATGTTAAACT TAAAAAAGGA
AAGAAGTCTT TCCCTGTTAA GTTAACAACT AAAAATAAGA AAAAGATAGA AATAAAAAAT
AAAGAACAAG CAGATCAAAT AATAGATGAA CTTAAAGAAA ATGAATATAT AGTAAGCAAG
ATAAAAAAAG GAACTAAGAA TAAAAATCCT TTAGCTCCAT TTACTACAAG TACTCTTCAA
CAAGAGGCAA GTAAAAAGCT TAACTTTATG ACAAAGAAAA CAATGTCAGT AGCTCAACAA
CTTTATGAAG GGGTTGAAGT TAAGAAATTT GGAACTGTAG GTTTAATAAC TTATATGAGA
ACTGATTCTG TTAGAATCTC AAAGGAAGCT CAAGAAAAAG CTCTTAACTT TATAGATGAA
ACATATGGAA AAGAGTATGT TCCAGAGGAA CCAAGAGTAT ATAAAGGAAA GAAAAATATA
CAAGATGCCC ATGAAGCCAT AAGACCTACA TATGTTGAAA TAACACCAGA GATTGCTAAG
GCAAACTTAA GTAATGATCA ATATAAGTTA TATGCTTTAA TATGGAAAAG ATTCATAGCA
AGCCAAATGG CTACATGTAT ATTAAATACT AATAGCCTAG AAATTAAAAA TGGAGATTAT
ACATTAAGAG CTAGTGGATC CACTATAAAA TTTGATGGTT TCATGAAAGT TTATGAGTAT
ATATTAGGGG AAGAGGAAGA ATCAGTACTT TTACCTGAAT TAGAAGAAAA TGAAGTTTTA
AAAGAAGAAT CAATTGAAGG TAAACAACAT TTTACTCAAC CACCTGCTAG GTATTCAGAG
GCTGCTTTTG TTAAGCTTTT AGAGGAAAAA GGTATTGGAA GACCAAGTAC TTACGTTCCA
ACAATATCTA CATTAATAAG TAGAAAATAT GTAGATAGAG AGAAAAAGAT TCTTATACCA
ACAGAATTAG GCTTTATAGT AAATGATATA CTTTCTAATT ATTTTAAGCA GATAGTTGAT
ACTGACTTTA CTGCAGAAAT GGAAGTTAAA CTTGATAATG TTGAAGCTGG AAAAGAAAGT
TGGACTCATA TAGTAGATGA ATTCTTTACT CCATTAAAGG AAGATATAGA AAAGGCAGAA
AAAGAGATAT CTAAGGTTAT TATAGAAGAT AAAGTCAGTG ATGTACCTTG TGATAAATGT
GGAAGACTTA TGGTTATTAA GCATGGAAGA TTTGGAGATT TCTTAGCTTG CCCTGGATAT
CCAGAGTGTC AAAATACAAA ACCTATAGTT GAAGAGGTTG ATGCAAACTG TCCATTATGT
GGAGGAAAGA TTTTAGTTAA GAGAAGTAAA AAGGGAAACA GATTCTATGG ATGTAGTAAT
TATCCAGAGT GTAATTTCGT AAGTTGGTAT GAACCAACAA ATGAAAAATG CCCAGAATGT
GGTTCATATA TGGTTAAGAG ATACTCTAAG AGTAAAGGTG AATATTTACA GTGTAGCGAT
AAAGAATGTA AATATGAAAA AATAATTGAA AAAAATAATG ATGAAAATAA CTCAGAAAAG
TAG
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| Protein sequence | MGQKLVIVES PAKAKTIEKY LGKNYVVEAS MGHVRDLPKS QLGVDIENEY NPKYITIRGK
GELLSKLRKL AKKSDKIYLA TDPDREGEAI SWHLANVLKI DENENCRIEF NEITKDAVKN
SIKHPRKINC NLVDAQQARR VLDRLVGYEI SPLLWRNVKW GLSAGRVQSA ALKLICDREE
EIKKFNPEEY WTVDVKLKKG KKSFPVKLTT KNKKKIEIKN KEQADQIIDE LKENEYIVSK
IKKGTKNKNP LAPFTTSTLQ QEASKKLNFM TKKTMSVAQQ LYEGVEVKKF GTVGLITYMR
TDSVRISKEA QEKALNFIDE TYGKEYVPEE PRVYKGKKNI QDAHEAIRPT YVEITPEIAK
ANLSNDQYKL YALIWKRFIA SQMATCILNT NSLEIKNGDY TLRASGSTIK FDGFMKVYEY
ILGEEEESVL LPELEENEVL KEESIEGKQH FTQPPARYSE AAFVKLLEEK GIGRPSTYVP
TISTLISRKY VDREKKILIP TELGFIVNDI LSNYFKQIVD TDFTAEMEVK LDNVEAGKES
WTHIVDEFFT PLKEDIEKAE KEISKVIIED KVSDVPCDKC GRLMVIKHGR FGDFLACPGY
PECQNTKPIV EEVDANCPLC GGKILVKRSK KGNRFYGCSN YPECNFVSWY EPTNEKCPEC
GSYMVKRYSK SKGEYLQCSD KECKYEKIIE KNNDENNSEK
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