| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1945 |
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| Symbol | polC |
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| ID | 4202564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2181712 |
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| End bp | 2186061 |
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| Gene Length | 4350 bp |
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| Protein Length | 1449 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 638082814 |
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| Product | DNA polymerase III PolC |
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| Protein accession | YP_696378 |
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| Protein GI | 110799061 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01405] DNA polymerase III, alpha chain, Gram-positive type |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGTAACG AGTTTGTTAA ACAGATTAAC AGATCCATAA AATCAGATGA TAATCTTAAT
GATTTAGAGT TTGAAATAAC TAAGTTTCAA TTGTTGAAGA AAAGCAATAC TTTAAGAACC
ATAATAAAAA GTAAAGATCA ATTATCAGAA GAACAAAAGA AAATAATTAA GCAATATATA
AAAAAAGCTA TAGGTTTTGA AATAAATATA GAGATTATGT ATTACATAGA TATTTCTGAT
ATAACTTTAA AACAGGTAGT AGATCAGCAT TGGAATCATG TTTGTGAAAA AATTATAGAG
AAACATCCTG TTTTAAAAGA AGTTTTACTT AATTCTCCTA TAGTAATTGA AGGAGAAAAA
ATAATTATAA AAAATGGTTC TGAGTTTTTA TGTACTTTTG TTAATAAAAA ACATATAGAT
AGAGAGATTA AGGGATATAT AAAATCATTC TTTGGAATAA ATTCTTTAGT AGAAGTTAAA
TATGATGAAA GTTTAGCTAA TAAGAATTAC AATGATGAAA AGTTAAATGA AAACAAAGAA
ATAGCTAAAA AAGTTATAGA AACTATGAAA GCTCAAGCTG CTCAAGAAAA GCCTGTTAAA
AAGGAAATTA GTGATAATAA ACATAAATCT AATGGTGGCA ATAAAGGTGG TTATGAGAAA
AAATCTTATA AAGATGAGCC TAAGAATGAA AATACTATAC TGGGAAGAAA TATTCAAGGA
GATACTATAG ATATAAGCAG TATAGATATG GGATCTGGAA TTGTTACTAT TTCAGGAGAT
GTATTTAAAA CTGATATTTT TGAAACTAAG ACAGGTAGAA TAATACTTAC ATTCTTCATA
ACAGACTATA CAAGTTCTAT AGCCGTTAAA TGCTTCTTAA GAGATAAGGA TAAAGAACAT
GTTTTAGAAA ATGTTAAAAA AGGTCTTTAT TGTAAAGTAA GAGGGGAAGC TACTATGGAT
CCTTATGCTA AGGAAGTTGT AATAATGGCT AGGGATATAA ATAAGCTTAC AAAAATAGAG
CGTATGGATA CAGCAGAGGA AAAAAGAGTA GAGCTTCATA TGCATACAAC TATGAGCTCA
ATGGATGCCG TAACTGCTGC AAGTAAAATT GTTGAGAGAG CAGCAAAGTT TGGACATAAG
GCTGTAGCCA TAACAGACCA TGGAGTTGTT CAGGCCTTTC CAGATGCTCA AATAGCTGCT
AAAAAGAATA ACATAAAAGT TATTTATGGG GTAGAGGGAT ATTTAGCTGA TAATGGAACA
CCTATAGTTA TTAATGGGCA TGAGGAATCC TTTGATGATG AGTATGTGGT TTTTGATATA
GAAACCACAG GTTTTTCAAG TAAAAATGAT AAGATTATAG AAATTGGTGC TGTTAAGTTA
AAGGATGGAG AAATAGTTGA TTCCTTTAGT ACTTTTGTTG ATCCAAAGGT AAATATTCCA
TATAAGATTA CAGAGCTTAC AAGTATAACT CAAAATATGG TTAATGGACA GCCTACTATA
GATGAAGTGC TTCCTAAATT TATGGAATTT GTAGGAGATT CTGTACTAGT AGCCCACAAT
GCTGCCTTTG ACGTTGGTTT TATAAAAAAG AACTTAATGG ATATGGGAAA AACTTTAAAG
AATCCTGTAA TGGATACTGT TCCTTTAGCT AGATATCTTT ATCCAGATTT AAAAAAGGTT
AAGTTAAATC TAGTTGCTAA ACATTTAGGA ATTAGCCTTG AAAATCACCA TAGAGCTGTT
GATGATGCAA AGGCTACTGC GGAGATATTA AAGTTTTCTT TCAAAAAGAT GAAAGAAGAA
ATGGATATTC ATGATGTTAA AACTCTAAAT GAAAAGTATT TATCAAATAT AGATGTAAAG
AAACTTCCTC TACATCACAT AATAATATTA GCTAAAAATC AAACTGGAAT TAAGAATTTA
TATAAATTAG TTTCTATGGC TCACTTAGAT TATTTTGCTA GAAGACCAAG ACTTCCTAAA
AGTATAATAA CTGAGTATAG AGAAGGTTTA ATAATTGGTT CAGCTTGTGA AGCAGGACAA
TTATATAAGG CAGTTTTAGA AGGAAAGACA GATGGGGAAT TAAAAGAAAT AGCATCTTTC
TATGATTATC TAGAAATTCA GCCAATACAA AATAATGAAT TCCTTATAAG AAAAGGAAAT
GTAAAAGATG AAGAAGAACT TAGAGAGTTA AATAGAAAAA TATATGATTT AGGAAAGGAA
ATGGATAAAC CAGTAGTGGC TACATGCGAT TGTCATTTCT TAGATCCTAA TGATGAAGTA
TTTAGAAGAA TAATAATGGC TGGTCAAGGA TATGGAGATG CAGATAATCA ACCACCTTTA
TATTTTAGAA CTACTAATGA AATGATGAAA GAGTTTGAAT ATTTAGGAGA AGAGGCTTGC
AGGGAAGTTG TAATAGAAAA TACTCAGAAG ATAGCTGATA TGGTTGAGGC TGTAAAACCT
ATACCAGATG AAACATTTCC TCCTAAAATA GAGGGGGCTG AGGAAGAAAT AAGAAACATG
ACTATGAATA AGGTTCATAG TATATATGGA GAAAATCTTC CTGAAGTTGT TCAAAAGAGA
TTAGATAAAG AACTTAATTC TATAATAAAT AATGGATATG CGGTGCTTTA TCTTATAGCT
CAAAAATTAG TTGCTAAATC CTTAGAAGAC GGATACCTAG TTGGTTCAAG GGGGTCTGTT
GGTTCCTCTT TCGTAGCAAC AATGTCAGAT ATAACAGAGG TTAATGGATT ACCACCTCAT
TATGTTTGTC CAAATTGTAA GAAATCAGAA TTTTTCTTAG ATGGTTCTAT AAGTTCAGGA
GCAGATTTAC CAGATAAAAA TTGTCCTGAT TGTGGAGCTA AGTATATTAA GGATGGCCAT
GATATTCCTT TCGAAACATT CTTAGGTTTT GAAGGAGATA AAGAACCAGA TATAGACCTT
AACTTCTCAG GGGAATACCA AGCTGTTGTA CATAAGTACA CAGAGGTTCT TTTCGGAAAA
GGATATGTAT TTAAAGCTGG AACTATAGGT ACAGTAGCTG AAAAAACAGC TTATGGTTTT
GTAAAAAAAT ACCTTCAAGA AAGAGGATTA GTTGTATCTC AAGCTGAAAT AGAAAGGCTT
ACTATTGGAT GTACTGGAAT AAAAAGAACT AGTGGACAGC ATCCTGGTGG AATCATGGTT
GTTCCAAATG ACAATGAAAT ATATAATTTT TGTCCAATAC AACATCCAGC TGATGATGTT
AACACAGATA TTATAACAAC TCACTTTGAT TACCATTCAA TAAGTGGTAG ACTTCTTAAG
CTTGATATAC TTGGACACGA CGACCCGACC GTTCTTAGAA TGCTTCAAGA CTTAACTGGC
TTAGATCCTA AGACAATACC TTTAAATGAT CCTAAGGTTA TAAGTTTATT TACATCACCA
GATGCCTTAG GGGTAACTAA AGAAGAATTA GGATGTGAAG TTGGTAGTTA TGGACTTCCT
GAGTTCGGTA CTAAATTCGT TAGACAGATG CTAGTTGATA CTCAACCTAA GAGTTTTGCA
GACCTTGTGA GAATATCTGG ACTTTCACAT GGTACTGATG TTTGGCTTAA TAATGCTCAG
TACTTTATTA AGGAAGGTTA TACTACACTA AAAGACTGTA TAGCAACAAG AGACGATATT
ATGGTTTATC TTATGTATAA AGATCTTCCT CCTAAGACAG CCTTTACTAT AATGGAAAAG
GTAAGAAAGG GAAAAGGACT TAGTGAAGAT GATGAAGCTT TAATGAGAGA GAAAAATGTA
CCAGATTGGT ATATTGAATC TTGTAAAAGA ATAAAATATA TGTTCCCTAA AGGCCATGCT
GTTGCATATG TTATGATGGC AGTTAGAATA GCATATTATA AAGTTTATTA TCCAGAAGCA
TATTACACAA CATATTTTAC AGTAAGAGCT GATGATTTCG ATGCAGACTT AATTTGTAAG
GGTGAAGAAG CAATAAAGGC AAAGATGGAA GAACTAAATT CTTTAGGAAA TAACATATCA
GTAAAAGAAA AAGGTCTTTT AACTATTTTA GAAATTTCTT ATGAAATGTA TAAAAGAGGA
TTGAATTTCT TAAAGGTTGA TTTATATAAA TCAGAAGCAA CTAAGTTTAA GATAGAAGAA
GATGGTATAA GACCTCCATT AAATGCTCTT CAAGGAGTTG GAGACAATGC TGCAAAAAGT
ATAGTTGAAT GTAGAGTTAA TGGAGAGTTT ATTTCAAAGG AAGATTTAAG ACTTAGATCT
AAGGTTTCAA AGACTGTAAT AGAAACTTTA GATAATCATG GATGCCTAGA AGGAATGCAA
GAAAGTAACC AACTTAGTTT GTTTGGCTAA
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| Protein sequence | MSNEFVKQIN RSIKSDDNLN DLEFEITKFQ LLKKSNTLRT IIKSKDQLSE EQKKIIKQYI
KKAIGFEINI EIMYYIDISD ITLKQVVDQH WNHVCEKIIE KHPVLKEVLL NSPIVIEGEK
IIIKNGSEFL CTFVNKKHID REIKGYIKSF FGINSLVEVK YDESLANKNY NDEKLNENKE
IAKKVIETMK AQAAQEKPVK KEISDNKHKS NGGNKGGYEK KSYKDEPKNE NTILGRNIQG
DTIDISSIDM GSGIVTISGD VFKTDIFETK TGRIILTFFI TDYTSSIAVK CFLRDKDKEH
VLENVKKGLY CKVRGEATMD PYAKEVVIMA RDINKLTKIE RMDTAEEKRV ELHMHTTMSS
MDAVTAASKI VERAAKFGHK AVAITDHGVV QAFPDAQIAA KKNNIKVIYG VEGYLADNGT
PIVINGHEES FDDEYVVFDI ETTGFSSKND KIIEIGAVKL KDGEIVDSFS TFVDPKVNIP
YKITELTSIT QNMVNGQPTI DEVLPKFMEF VGDSVLVAHN AAFDVGFIKK NLMDMGKTLK
NPVMDTVPLA RYLYPDLKKV KLNLVAKHLG ISLENHHRAV DDAKATAEIL KFSFKKMKEE
MDIHDVKTLN EKYLSNIDVK KLPLHHIIIL AKNQTGIKNL YKLVSMAHLD YFARRPRLPK
SIITEYREGL IIGSACEAGQ LYKAVLEGKT DGELKEIASF YDYLEIQPIQ NNEFLIRKGN
VKDEEELREL NRKIYDLGKE MDKPVVATCD CHFLDPNDEV FRRIIMAGQG YGDADNQPPL
YFRTTNEMMK EFEYLGEEAC REVVIENTQK IADMVEAVKP IPDETFPPKI EGAEEEIRNM
TMNKVHSIYG ENLPEVVQKR LDKELNSIIN NGYAVLYLIA QKLVAKSLED GYLVGSRGSV
GSSFVATMSD ITEVNGLPPH YVCPNCKKSE FFLDGSISSG ADLPDKNCPD CGAKYIKDGH
DIPFETFLGF EGDKEPDIDL NFSGEYQAVV HKYTEVLFGK GYVFKAGTIG TVAEKTAYGF
VKKYLQERGL VVSQAEIERL TIGCTGIKRT SGQHPGGIMV VPNDNEIYNF CPIQHPADDV
NTDIITTHFD YHSISGRLLK LDILGHDDPT VLRMLQDLTG LDPKTIPLND PKVISLFTSP
DALGVTKEEL GCEVGSYGLP EFGTKFVRQM LVDTQPKSFA DLVRISGLSH GTDVWLNNAQ
YFIKEGYTTL KDCIATRDDI MVYLMYKDLP PKTAFTIMEK VRKGKGLSED DEALMREKNV
PDWYIESCKR IKYMFPKGHA VAYVMMAVRI AYYKVYYPEA YYTTYFTVRA DDFDADLICK
GEEAIKAKME ELNSLGNNIS VKEKGLLTIL EISYEMYKRG LNFLKVDLYK SEATKFKIEE
DGIRPPLNAL QGVGDNAAKS IVECRVNGEF ISKEDLRLRS KVSKTVIETL DNHGCLEGMQ
ESNQLSLFG
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