Gene CPF_1887 details

Gene Information

• Locus tag: CPF_1887
• ID: 4201819
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: -
• Start bp: 2122948
• End bp: 2123514
• Gene Length: 567 bp
• Protein Length: 188 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 638082756
• Product: putative transcriptional regulatory protein
• Protein accession: YP_696320
• Protein GI: 110800387

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.471019
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAGTG TTATGAATTT AACAACTTTA GAACAAATAA AAGCATATTC AGATCCTTAT 
AGGCTGAAGA TAATAACTTA TCTTAGAAAT AATCAAGAAT CTGCTACGGT AAAGGAAATT 
GCTGATTTTT TTGGGGAAGT ACCAGCAAAA GTTCATTACC ATATTAAAAA ATTAGAAAAA 
GCAGGCATCT TAGAGCTTGT AAAAACAAAA GAAATAAAGG GAATAATAGC AAAATATTAT 
TATCTAACTG CAGAAAGCTT CAATATAGAG GGAAATCAAA TTAAAAAAGA AGCTAAACAA 
GTTTACAAAT CTCAAATATT AAATATTCTA AGTGAATATT ATGATAGTTC AAAGGAACAA 
ACTATGAAAA GAATATCTGA GAAAGTAGAT ACTGGTAATG CAGAGGATTC CATAGGTTTC 
AATTATAAGA ACATATACTT AAATGAAGAA GAGTTTAAAG AAGTAAATAG ACAAATGAGA 
GAACTGGTTA AAAAATACGA AAGAAAAGAA GAAGGAAAAA TGCCTTGTCA TGTATTTTCA 
GTTTGCTTAA AACATGAAGT AGAGTAA 

 

Protein sequence

MNSVMNLTTL EQIKAYSDPY RLKIITYLRN NQESATVKEI ADFFGEVPAK VHYHIKKLEK 
AGILELVKTK EIKGIIAKYY YLTAESFNIE GNQIKKEAKQ VYKSQILNIL SEYYDSSKEQ 
TMKRISEKVD TGNAEDSIGF NYKNIYLNEE EFKEVNRQMR ELVKKYERKE EGKMPCHVFS 
VCLKHEVE