Gene CPF_1853 details

Gene Information

• Locus tag: CPF_1853
• Symbol: thiH
• ID: 4203863
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: -
• Start bp: 2089404
• End bp: 2090507
• Gene Length: 1104 bp
• Protein Length: 367 aa
• Translation table: 11
• GC content: 31%
• IMG OID: 638082723
• Product: thiamine biosynthesis protein ThiH
• Protein accession: YP_696287
• Protein GI: 110800869
• COG category: [H] Coenzyme transport and metabolism; [R] General function prediction only
• COG ID: [COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes
• TIGRFAM ID: [TIGR02351] thiazole biosynthesis protein ThiH

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.287617
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAGTTTTT ATGATGTAGT AGAAAAATAT AGAGATTTTG ATTTTTATGG ATATTTTGAT 
TCTGTAAAAA AGGAAGATGT ATTAAGAAGT ATTTATGAAA GAAATAAGAG ACCAGAGGAT 
TTACTTAATT TAATATCTCC TATGGGAGAA GAGCTTTTAG AAGAAATGGC TCAAGAAGCA 
AGAAATCTCT CTTTAAAATA TTTTGGAAGA ACAATATTAC TTTATACACC TATGTATATC 
TCAAATTATT GTGTAAATAA GTGTTCATAT TGTGGGTATA ATGTAGAAAA TAAAATATGT 
AGGAAAAAAT TAAATCAAGA AGAAATAGAA AAAGAGGGGA AAGCTATTTC AAAGGATGGA 
TTTAAACATA TTCTAATATT AACAGGGGAA AGTGAATATC ATACTCCAGT AGAGTATATA 
GAGGAGAGCA TTAAAACTTT GAAAGAGAAA TTTCCTTCCA TAACTATTGA AATATATCCA 
ATGACAGAAG AGGGATATAA AAAGGTGGTA GAAGCAGGTG CTGAAGGGCT TACTGTATAT 
CAAGAGACCT ATGATGAAAA AGTATATGAT AGGGTTCATG TGGCTGGTCC AAAGAAAAAT 
TATAAATTCA GATTAGAAGC TCCAGAGAGA GGAGCAGAAG CTGGAATGAG AAGCATAAGT 
ATAGGAGCCT TATTAGGATT AGCTGATTTT AGAATAGATG CCTTCTTTAC AGCAATGCAT 
GGAAAATATT TAAGAGATAA GTATCCTCAT ATAGATATAA GTTATTCGGT GCCAAGAATA 
AGACCCTGTG AAGGAGGGCT TAAAAAGTTA AATGAAGTTG ATGATAGGGA ACTAGTACAA 
ATACTTTTAG CCTATAGACT ATTTGATCCT CAAGGAGGAA TAAATATATC TACTAGAGAA 
GGAAAGGATT TTAGAAGAAA TTTAATTCCT TTAGGAGTAA GTAAAATTAG TGCTGGAGTT 
TCTACTGAAG TTGGAGGCCA TTCTTTAAAA GAAAAAGGTA CAAGTCAATT TGATATAAAT 
GATGAAAGTT CTGTAAGTGA AGTTAAGGAA TTAATAAAAA GTCAAGGTTA TCAACCTATA 
TTTAAGGATT GGCATAGATT TTAA 

 

Protein sequence

MSFYDVVEKY RDFDFYGYFD SVKKEDVLRS IYERNKRPED LLNLISPMGE ELLEEMAQEA 
RNLSLKYFGR TILLYTPMYI SNYCVNKCSY CGYNVENKIC RKKLNQEEIE KEGKAISKDG 
FKHILILTGE SEYHTPVEYI EESIKTLKEK FPSITIEIYP MTEEGYKKVV EAGAEGLTVY 
QETYDEKVYD RVHVAGPKKN YKFRLEAPER GAEAGMRSIS IGALLGLADF RIDAFFTAMH 
GKYLRDKYPH IDISYSVPRI RPCEGGLKKL NEVDDRELVQ ILLAYRLFDP QGGINISTRE 
GKDFRRNLIP LGVSKISAGV STEVGGHSLK EKGTSQFDIN DESSVSEVKE LIKSQGYQPI 
FKDWHRF