Gene CPF_1766 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1766 
Symbol 
ID4202628 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp1990693 
End bp1992060 
Gene Length1368 bp 
Protein Length455 aa 
Translation table11 
GC content25% 
IMG OID638082638 
Productputative alginate biosynthesis protein AlgI 
Protein accessionYP_696202 
Protein GI110799298 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1696] Predicted membrane protein involved in D-alanine export 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.004681 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTATTTA GCAGTATTAT GTTTATATTT AGATTTTTAC CAATAATGTT TATAATATAC 
TACCTAACTC CAAATAAATT TAAAAATTTA TCTCTATTAA TATTAAGTTT AGTATTTTAC
TCATGGGGAG AACCAAAGTA TTTTATTATA ATGCTTTTAT CCATAGGAGT AGATTATTCA
ATAAGTATTT TTATTGAAAA ATATAAGAAG AAAAAAATAA TCACTAAGGT ACTTTTATTT
TGCTCTCTTA TATTTAATTT AGGTATGCTC ATATTATTTA AATATTTGAA TTTCTTTATT
GAAAATATAA ATTTAGTTCT TGGGACTTCT TTATCATTAA TATATTTAAC CTTACCTCTA
GGAATAAGTT TTTATACCTT TCAGACTATG TCATATACCA TTGATGTATA TAGAGGAAAG
ATAAAGGCTG AAAGAAATAT AATAAACTTT GGGGCTTATG TATGTCTTTT TCCACAGCTT
ATAGCAGGTC CCATAGTAAA ATATTCAGAC ATAAAAAATG AACTTAAAAA TAGGAAAATT
AAAGTTAATC AAGTTGAAGA AGGAATTACT GAATTTATAA TAGGAATGGG CAAGAAGGTT
TTAATAGCTA ATAATATAGG TCTTCTATGG AATGAGATTC AAGAACTTGG AATAAGTTAC
GTGTCAACTC CTTTATTATG GCTTGGTGTA ATAGCATTTT CTTTTCAGAT TTATTTTGAT
TTTAGTGGAT ATTCCTCTAT GGCCATAGGA CTTGGAAAGA TGCTTGGATT TGATTTTCCT
GAAAATTTTA ATTTCCCATA TATATCAAGA AGTATTACTG AGTTTTGGAG GAGATGGCAT
ATTACCCTTG GCGCTTGGTT TAAGGAATAT GTTTATATTC CTATGGGAGG GAATAGATTA
GGGAAAAATA GGACAATATT AAATCTTTTT ATTGTATGGT TTTTAACTGG TTTTTGGCAT
GGAGCAAAAT ATAATTTTAT AATATGGGGA TTATATTTTT TCTTTCTTAT TGTTATAGAA
AAAGTTTTTT TAATGAATTA TTTAAATAAA TATAAGATTT TTTCTCATAT ATATGCAATA
GTTTTTATAG TTTTTGGGTG GGCACTTTTT TCCTTTGAGG ATTTACTTAG TATAAAGTAT
TTATTTAGAA TGAATTTTTC TTTAGATTTT ATTTATTATT TAAGAAACTA TTTTTTAGTT
ATTATAATAG CTATTTTAGG ATCTACAAAG TTAATAAATA ATATTTATGA GAGATTCATA
AAGAAAAATA AATCTTTAGA ATGCTTAGTA TTAATGATGG TGTTTATATT ATCAGTAGCA
TATTTAGTGG ATTCTACTTA TAATCCATTT CTTTATTTTA GATTTTAG
 
Protein sequence
MVFSSIMFIF RFLPIMFIIY YLTPNKFKNL SLLILSLVFY SWGEPKYFII MLLSIGVDYS 
ISIFIEKYKK KKIITKVLLF CSLIFNLGML ILFKYLNFFI ENINLVLGTS LSLIYLTLPL
GISFYTFQTM SYTIDVYRGK IKAERNIINF GAYVCLFPQL IAGPIVKYSD IKNELKNRKI
KVNQVEEGIT EFIIGMGKKV LIANNIGLLW NEIQELGISY VSTPLLWLGV IAFSFQIYFD
FSGYSSMAIG LGKMLGFDFP ENFNFPYISR SITEFWRRWH ITLGAWFKEY VYIPMGGNRL
GKNRTILNLF IVWFLTGFWH GAKYNFIIWG LYFFFLIVIE KVFLMNYLNK YKIFSHIYAI
VFIVFGWALF SFEDLLSIKY LFRMNFSLDF IYYLRNYFLV IIIAILGSTK LINNIYERFI
KKNKSLECLV LMMVFILSVA YLVDSTYNPF LYFRF