Gene CPF_1725 details

Gene Information

• Locus tag: CPF_1725
• ID: 4201254
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 1948648
• End bp: 1949295
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 638082597
• Product: hemolysin III
• Protein accession: YP_696161
• Protein GI: 110799984
• COG category: [R] General function prediction only
• COG ID: [COG1272] Predicted membrane protein, hemolysin III homolog
• TIGRFAM ID: [TIGR01065] channel protein, hemolysin III family

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.000437413
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAATA CGTTTTTTAG AGAGCCAATA AATGGTTTTA CTCATTTATT TGGTGCTATT 
TTATCAATAT TCGCCTTAGT GGCACTAACA GCTAAAGCTA CTTATATATA CGGGATTGGA 
TTACCACTTT TATCAGTTAT TCTATTTGGT TTTTCATTAG TGTTGCTTTA TAGTGCCTCT 
GCTATATACC ATTTAGTTAA TGCAAAGGAA AAAACTATAG CATTTTTAAG ACGTTTAGAC 
CATTCTATGA TCTTTATACT TATCTGCGGA AGTTATATGC CTTATTGTCT TATTGGTCTT 
GAAGGTAAAG CTCAAATTTT TATAACTTCT TTAATAGTAA TTCTTACGAT TTTAGGTATT 
TTATTTAAGA TGGTTTGGTT TAATTGTCCT AGAATTCTTT CTACTCTTAT GTATATAGGA 
ATGGGATGGA TTTCTTTAGG TGCTATTCCA TTTTTCAAAA ACATACCTGC TTTAGCATTA 
ATTTGGTTAG CAATAGGTGG AGTTATATAT ACAATTGGTG GAATAATTTA TGCACTTAAA 
CCAAAATTTC TTGAATTTAA TAACTTAGGA TTCCATGAAA TATTTCATAT ATTCATATTA 
TTAGGAAGCC TATGTCACTT TATATCAATT TTCTTTTATC TACTATAA 

 

Protein sequence

MKNTFFREPI NGFTHLFGAI LSIFALVALT AKATYIYGIG LPLLSVILFG FSLVLLYSAS 
AIYHLVNAKE KTIAFLRRLD HSMIFILICG SYMPYCLIGL EGKAQIFITS LIVILTILGI 
LFKMVWFNCP RILSTLMYIG MGWISLGAIP FFKNIPALAL IWLAIGGVIY TIGGIIYALK 
PKFLEFNNLG FHEIFHIFIL LGSLCHFISI FFYLL