Gene CPF_1617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1617 
Symbol 
ID4203641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp1829551 
End bp1830699 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content27% 
IMG OID638082495 
ProductYbiE/YbiF family membrane protein 
Protein accessionYP_696060 
Protein GI110799376 
COG category[S] Function unknown 
COG ID[COG5438] Predicted multitransmembrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0997624 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAATA GTAAAAAGAG TATTATTTTT ATTATAAGTA CAGTTTTAAT ATCTTTTTTA 
ATTATAGGAT TTTCAAGATT TATATTTGAT AATGGCTTTA TGAAGGATAG ACTAAATAAA
AATGTGCAAT ATTATGAAGG AAAAGTAAAG AGAATAACTA AAGAGATGTT AGAAGGAGAT
AAATACATAG AGGGTATAGA GCTAGGATAT CAAAATATAG TCATAGAAAT TTTAGAGGGA
CCAGAAAAGG GGAAGGAATA TGAAATCGTA AATAATATTA GCAGAATATA CAATATGCCA
GTTGAGGAAG ATACTAAAGT AATTCTAGGT TTCTTTTATG AGAAGGATGA AATAAAAGAT
ATAGCTGTTT ATAGTTATAA AAGAAGTAAC ATAATATTTT TGCTAGTACT ATTATTTGTA
ATAGTCATAA TTGGAGTAGG TGGAGTAAAG GGAATAAAAT CATTAGTTTC ACTGTTTTTT
ACTTGTGTTT GTATAATATT TTTAATGATT CCACTAATGT TAAGAGGGGT AAATCCAATA
TTAGCAGCAA TTTTTTCAGC GCTTATAAGT ATTATTGTTA CATTGGTTTT AGTTTCTGGA
ATAAATAAAA AAACTTTTAC TGCTATTTTA GGAACCTTAA GTGGAATAAT TATATCAGGA
GTAATAGCAA TAAGTTTTGG AAAACTTGCA AATTTATCAG GTATTAGTAT GGAAGAAGCT
GAAAGTATGA TGTATATAGC TGAAAATACC TCCTTAAATA TTCATGGAAT AATGTTTGCA
GCTATATTAA TAGCATCTTT AGGAGCAGTT ATGGATGTTG CTATGTCTAT TTCCTCATCA
ATTTTTGAAA TAAATGATAT TAATGATACT TTAAATAAAA GGGGATTATT TAAAAGTGGA
ATGAATATAG GAAAGGATAT AATAGGAACA ATGGCTAATA CATTAATATT AGCTTTTGCT
GGAGGGTCCT TAAATACAAT AATAATGTTA TATGCTTCTA ATATGAGTAA AAATCAAATA
TTAAATTTAG ATGTGCTTTG TATAGAAGTT ATACAAGGCC TTGCAGGCAG CATAGGAATT
ATACTTACAG TGCCAATAAC AGCTTTTATA GCAAGTTATT TTTGTAAGTT GAATTTAAAA
AAAGTGTAA
 
Protein sequence
MKNSKKSIIF IISTVLISFL IIGFSRFIFD NGFMKDRLNK NVQYYEGKVK RITKEMLEGD 
KYIEGIELGY QNIVIEILEG PEKGKEYEIV NNISRIYNMP VEEDTKVILG FFYEKDEIKD
IAVYSYKRSN IIFLLVLLFV IVIIGVGGVK GIKSLVSLFF TCVCIIFLMI PLMLRGVNPI
LAAIFSALIS IIVTLVLVSG INKKTFTAIL GTLSGIIISG VIAISFGKLA NLSGISMEEA
ESMMYIAENT SLNIHGIMFA AILIASLGAV MDVAMSISSS IFEINDINDT LNKRGLFKSG
MNIGKDIIGT MANTLILAFA GGSLNTIIML YASNMSKNQI LNLDVLCIEV IQGLAGSIGI
ILTVPITAFI ASYFCKLNLK KV