Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1502 |
Symbol | rnr |
ID | 4202762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 1713602 |
End bp | 1715857 |
Gene Length | 2256 bp |
Protein Length | 751 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 638082380 |
Product | ribonuclease R |
Protein accession | YP_695945 |
Protein GI | 110800238 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.211368 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATAA AAGATATAAT TTTAGGGTTT ATGAAAGAAG AAGCATACAG ACCAATGACA ATGTTAGAAT TATCAAAGAT ATTTAACATA AATAAAGCTG AATATAAACA ATTTAAAAAA GTCTTTAAGG CATTAGAGGC AGAGGGATTA ATAGCTAGAG ATGAGGAAGA TAGATTTGGC TTAATAGATA AAGTGGGTTT AATACCTGGA AAAATTCAAA TACATCAAAA GGGATTTGGT TTCTTAATAC CAGATGAAGA AGGTGTAACT GATGTATTTA TACCTAAGAA TGCTTTAAAT GGGGCTATGA ACGGAGATAG AGTATTAGGT AAGGTTGTAA AAGAAAGCCA AGAAGGAAAA AGACGTGAAG GTGAAATAGT AAGAATAACT GAGAGAGTTA ACACAAAGGT AATAGGAATA TATGAGGATA ATAAGAGTTT TGGATTTGTA CTTCCACAGG ATCAAAGAAT TCAAAATGAT ATATTCATAT CTAAGAAGGA TAGAAATGGA GCTAAAAAAG GTAATGTAGT TGTTGTTGAA ATAACTAAGT GGCCAGATGG TAGAAGAAAG AATCCAGAAG GAGTAGTAGT AGAAATACTA GGAAACAGAG GAGATTTAGG TTTAGATATT ATAACTGTAA TTAAGAAATA TGCTCTTCCA GAAGAATTCC CTCCACAAGT TTTAGCCTTT GCAGAAGAAA TTTCAGAGGA AATCCCAGAG TCAGAAATTA AGAGAAGAAC AGATTTAAGA GATGTAAAAA TGGTTACTAT AGATGGTGAA GATGCTAAGG ATTTAGATGA TGCTGTATCT ATAGAAAGAC TTCCAAATGG AAACTATAAA TTAGGAGTTC ATATTGCAGA TGTAACTCAC TATGTAAAAG AAAATAATCC TTTAGATAAA GAGGCCTTTA AGAGAGCTAC TTCTGTTTAC TTAGTTGATA GAGTTATTCC TATGCTTCCT AAAAAGTTAT CAAATGGAAT ATGTTCATTA AATCCACAGG TAGACAGACT TGCTTTAACT TGCTTTATGG AAATAGATCA TAAAGGAAAT GTGGTTAACC ATTCAATACA TGAAAGTGTA ATTAAAACTA ATGAGAGAAT GACATACACT GATGTAACTA AGATTTTAAG AGATAATGAC AAAGAGTTAA TTGAAAGATA TAAAGATTTA GTAGATGATT TTAAGGCTAT GGAAGAGTTA TGTAAAATCT TGAATAAGAG AAGAATGGGA AGAGGAGCTA TTGACTTTGA ATTTGCAGAG AGCAAAATAA TCTTAGATGA AAAAGGAAAG CCAATAGATA TAAAACCATA TGAAAGAGCT ATAGCAAACA GAATCATAGA AGAATTTATG TTAGTATGTA ATGAAACTAT AGCAGAATAT ATGAATAAGG CTGAAATACC TTTTGTATAT AGAATACATG AGGAGCCAGA TAATGAAAAA CTTCAAAGAT TTAAAAACTT TGCATATAGC TTAGGATATT CATTTAATTT TGGAGAACTT ATTGAGCCTA GAGATTTACA AAAGGTTGTT GAAGAAGTTA AGGGCAAAAA TGAAGAGATG GTAATAAACA CATTACTTTT AAGAAGTATG ATGCAAGCTA GATATTCTCC AGACTGTGCA GGTCACTTTG GATTAGCAGC TGAATACTAT TGTCACTTTA CTTCACCAAT TAGAAGATAT CCAGACTTAC AAATTCATAG AATAATAAAA GAATATATAA ATAAGAAGAT TGATCCTAAG AGAGCTAAGA GACTTTTAAG TATTGTTGAC TCTGCATCTA AGCAATCTTC AGAAATGGAA AGAATAGCTC AAGAAGCTGA AAGAGAAACA AATGATCTTA AGAAGGCTGA ATATATGAAA GATAGAATTG GAGAAATATT TGATGGTATT ATTTCTTCAG TTACTGGATT TGGAGCCTTT GTTGAACTTC CAAATACTGT AGAAGGTCTT GTTCATGTAA CAAGCTTTAG AGATGATTAT TACATCTATG ATGAGGAAAA CCTTCAATTA ATAGGTGAAA GAACTAAGAA GGTTTATAAA CTTGGAGAAA AGGTTAAGGT TCTTTGCTCA AGAGTAGAAA TGGATACTAG AGAAGTTTAT TTTGAAATAG TTGAGGATAA GTACACTATT GAGGAAAAGG AAGCTGAAAC TGAAGAGAGA GAGAATTTAC TTGATGAAGT AAAAAAAGAG CTTGAAGCAG AGGGAAAGGT TGAAATAATA GAACCAAGAG AAGAAACTGC TGAGGAAGAG CTTTAA
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Protein sequence | MKIKDIILGF MKEEAYRPMT MLELSKIFNI NKAEYKQFKK VFKALEAEGL IARDEEDRFG LIDKVGLIPG KIQIHQKGFG FLIPDEEGVT DVFIPKNALN GAMNGDRVLG KVVKESQEGK RREGEIVRIT ERVNTKVIGI YEDNKSFGFV LPQDQRIQND IFISKKDRNG AKKGNVVVVE ITKWPDGRRK NPEGVVVEIL GNRGDLGLDI ITVIKKYALP EEFPPQVLAF AEEISEEIPE SEIKRRTDLR DVKMVTIDGE DAKDLDDAVS IERLPNGNYK LGVHIADVTH YVKENNPLDK EAFKRATSVY LVDRVIPMLP KKLSNGICSL NPQVDRLALT CFMEIDHKGN VVNHSIHESV IKTNERMTYT DVTKILRDND KELIERYKDL VDDFKAMEEL CKILNKRRMG RGAIDFEFAE SKIILDEKGK PIDIKPYERA IANRIIEEFM LVCNETIAEY MNKAEIPFVY RIHEEPDNEK LQRFKNFAYS LGYSFNFGEL IEPRDLQKVV EEVKGKNEEM VINTLLLRSM MQARYSPDCA GHFGLAAEYY CHFTSPIRRY PDLQIHRIIK EYINKKIDPK RAKRLLSIVD SASKQSSEME RIAQEAERET NDLKKAEYMK DRIGEIFDGI ISSVTGFGAF VELPNTVEGL VHVTSFRDDY YIYDEENLQL IGERTKKVYK LGEKVKVLCS RVEMDTREVY FEIVEDKYTI EEKEAETEER ENLLDEVKKE LEAEGKVEII EPREETAEEE L
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