Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1414 |
Symbol | |
ID | 4202123 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 1594664 |
End bp | 1595638 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 638082294 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_695859 |
Protein GI | 110800940 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.003829 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAAATAG AGATAGGTAC AAATGAAGCG GGACAGAGAT TAGATAAGTT CTTAAGAAAA TATTTAAAGG ATGTACCTCT AAGTGCAATA TTTAAAGCCC TAAGAAAGGG TGATATAAGA GTAAATGGAA AGAAGCAAAA AGAAAAGTAT TCTCTTTTAG AAGGAGATGT TATAGAGATA AGATATCTTC AAAGTGTAGT AACTAAGGAG AAGAAAAAGC CTAATTTCCA AATGGTTGAT TCAGGATCAC TTCAAGTGGT ATATGAAGAT GAAAATATGC TTTTAGTTGA GAAATGGCCA GGAGTATTAG TTCATTCAGA TAAAAAGAAT GGAGCTCCAA CCTTAACTGA CTATGTATTA TCATACTTAT TCAGAAAAGG AGATTATGTT CCAGAAAATG AATTAACTTT TACTCCTGCA TCTTGTAACA GATTAGATAG AAATACTTCA GGAATAGTAT TTTTCGGTAA GAATTTTGAA GGATTAAAAT TACTTAACGA GATGATAAGA GAAAGAAAAG TTAAGAAGTA TTACTGTGCT TTAGTAAAGG GAAAAATACA GCCTGGAAAA TATGAAGCAT ATATATCAAA AGATGATGAA TTAAATAAGT CAACAGTTTA CGATACTGAA AGACCAGATA CAAAGAAAAT AAAAATGGAT GTTAAGGTTC TACAAACTAA TGGTGCCTTT TCATTATTAG AAATAGAACT TATAACTGGA AGAAGTCATC AGTTAAGAGC TCATTTAGCT CATTTAGGAA ATCCTATTGT TGGAGACTTT AAATATGGTG ATAATAAAAT GAATTCCTTC TTTGAAAATA AGTTTGGATT AACATATCAA TTCCTTTATG CTTATAAAGT TACATTTAAA GAGGTTCCTG AAAAGTTTGA TTACTTAAAA AATAAAACTA TAGCTCAGGG ATTACCTCCA ATGTTTAAAA AGATAAAGAA GGATGTATTT AAATTTAGGA TTTAG
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Protein sequence | MKIEIGTNEA GQRLDKFLRK YLKDVPLSAI FKALRKGDIR VNGKKQKEKY SLLEGDVIEI RYLQSVVTKE KKKPNFQMVD SGSLQVVYED ENMLLVEKWP GVLVHSDKKN GAPTLTDYVL SYLFRKGDYV PENELTFTPA SCNRLDRNTS GIVFFGKNFE GLKLLNEMIR ERKVKKYYCA LVKGKIQPGK YEAYISKDDE LNKSTVYDTE RPDTKKIKMD VKVLQTNGAF SLLEIELITG RSHQLRAHLA HLGNPIVGDF KYGDNKMNSF FENKFGLTYQ FLYAYKVTFK EVPEKFDYLK NKTIAQGLPP MFKKIKKDVF KFRI
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