Gene CPF_1414 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1414 
Symbol 
ID4202123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp1594664 
End bp1595638 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content29% 
IMG OID638082294 
ProductRluA family pseudouridine synthase 
Protein accessionYP_695859 
Protein GI110800940 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.003829 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAAATAG AGATAGGTAC AAATGAAGCG GGACAGAGAT TAGATAAGTT CTTAAGAAAA 
TATTTAAAGG ATGTACCTCT AAGTGCAATA TTTAAAGCCC TAAGAAAGGG TGATATAAGA
GTAAATGGAA AGAAGCAAAA AGAAAAGTAT TCTCTTTTAG AAGGAGATGT TATAGAGATA
AGATATCTTC AAAGTGTAGT AACTAAGGAG AAGAAAAAGC CTAATTTCCA AATGGTTGAT
TCAGGATCAC TTCAAGTGGT ATATGAAGAT GAAAATATGC TTTTAGTTGA GAAATGGCCA
GGAGTATTAG TTCATTCAGA TAAAAAGAAT GGAGCTCCAA CCTTAACTGA CTATGTATTA
TCATACTTAT TCAGAAAAGG AGATTATGTT CCAGAAAATG AATTAACTTT TACTCCTGCA
TCTTGTAACA GATTAGATAG AAATACTTCA GGAATAGTAT TTTTCGGTAA GAATTTTGAA
GGATTAAAAT TACTTAACGA GATGATAAGA GAAAGAAAAG TTAAGAAGTA TTACTGTGCT
TTAGTAAAGG GAAAAATACA GCCTGGAAAA TATGAAGCAT ATATATCAAA AGATGATGAA
TTAAATAAGT CAACAGTTTA CGATACTGAA AGACCAGATA CAAAGAAAAT AAAAATGGAT
GTTAAGGTTC TACAAACTAA TGGTGCCTTT TCATTATTAG AAATAGAACT TATAACTGGA
AGAAGTCATC AGTTAAGAGC TCATTTAGCT CATTTAGGAA ATCCTATTGT TGGAGACTTT
AAATATGGTG ATAATAAAAT GAATTCCTTC TTTGAAAATA AGTTTGGATT AACATATCAA
TTCCTTTATG CTTATAAAGT TACATTTAAA GAGGTTCCTG AAAAGTTTGA TTACTTAAAA
AATAAAACTA TAGCTCAGGG ATTACCTCCA ATGTTTAAAA AGATAAAGAA GGATGTATTT
AAATTTAGGA TTTAG
 
Protein sequence
MKIEIGTNEA GQRLDKFLRK YLKDVPLSAI FKALRKGDIR VNGKKQKEKY SLLEGDVIEI 
RYLQSVVTKE KKKPNFQMVD SGSLQVVYED ENMLLVEKWP GVLVHSDKKN GAPTLTDYVL
SYLFRKGDYV PENELTFTPA SCNRLDRNTS GIVFFGKNFE GLKLLNEMIR ERKVKKYYCA
LVKGKIQPGK YEAYISKDDE LNKSTVYDTE RPDTKKIKMD VKVLQTNGAF SLLEIELITG
RSHQLRAHLA HLGNPIVGDF KYGDNKMNSF FENKFGLTYQ FLYAYKVTFK EVPEKFDYLK
NKTIAQGLPP MFKKIKKDVF KFRI