| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1350 |
|---|
| Symbol | ppcA |
|---|
| ID | 4202414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 1523375 |
|---|
| End bp | 1524988 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 638082231 |
|---|
| Product | phosphoenolpyruvate carboxylase |
|---|
| Protein accession | YP_695796 |
|---|
| Protein GI | 110800109 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1892] Uncharacterized protein conserved in archaea |
|---|
| TIGRFAM ID | [TIGR02751] phosphoenolpyruvate carboxylase, archaeal type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00293216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAC CTTGTTCCAT GATGACTCAA CATCCGGATA ATGTAGAAAC TTATATTTCA
ATACAACAAG AACCAGCAGA AGCGATAAAA GGATTAACAC CACAAGATAA AGGTGGTTTA
GGAATAGAAG AAGTTATGAT AGATTTTGAA GGAAAGTTAA CACCTTACCA TCAAACATCA
CAAATAGCAT TAGGATTAAT TTCAAATGGT ATAATTCCAG GAAAAGACGT TAGGGTAACT
CCTAGAATAC CTAATGCAAA TAAAGAATCA GTATTTAGAC AACTTATGAG TATAATGTCT
ATAATTGAAA CAAATGTTCA ATCAAAAGAA TTAACTGGAA TTCCAGCAAT CTCAGAGGTT
GTTGTTCCTA TGATTGAAAC TGGTAAAGAA ATTTCAGAGT TTCAAGATAG AGTTAACTCA
GTAGTTGATA TGGGGAATAA AAACTACAAA ACTAAATTAG ATTTAAATAG TGTTAGAATA
ATACCTCTAG TTGAGGATGT ACCTGCACTA GCAAATATAG ATAGAATATT AGATGAACAT
TACGAAATAG AAAAGAGTAA AGGACATGTT TTAAAAGATC TTAGAATAAT GATAGCAAGA
TCTGATACAG CTATGTCATA TGGATTAATT TCAGGAGTTT TATCAGTTCT TATGGCGGTT
GATGGAGCTT ATAAATGGGG AGAAAAACAT GGTGTAACTA TAAGCCCAAT CTTAGGTTGT
GGATCACTTC CATTTAGAGG CCATTTCTCA GAAGAAAACA TAGATGAAAT CCTTGCTACA
TATAGTGGAA TTAAAACTTT CACATTCCAA TCTGCTTTAA GATATGATCA TGGTGAAGAA
GCAACTAAAC ATGCAGTTAA TGAATTAAAA GCAAAAATTG CAGAATCAAA ACCTAGAAAT
TTCAGTGAAG AAGATAAAGA TTTAATGAAA GAATTCATAG GAATCTGTTC AAAACATTAT
CTTCAAACAT TCTTAAAGGT AATAGATACA GTTTCATTTG TATCTGACTT TATTCCTAAG
AATAGAGATA GATTAACAAA AGCTAAAACT GGATTAGAAT ATAATAGAGA AGTAGCAAAC
TTAGACAACG TAGCAGATTT AGTTAAGGAT GAAGTATTAA AACAAGAAAT TCTTAGCATA
GATAACTCAA AAGAATATGC AGTTCCAAGA GCTATATCAT TTACTGGAGC TATGTACACA
TTAGGAATGC CACCTGAACT TATGGGAATG GGTAGAGCAT TAAATGAAAT AAAAACTAAG
TATGGCCAAG AAGGTATAGA TAAACTTTTA GAAATATACC CAATCTTAAG AAAAGACTTA
GCATTTGCTG CTAGATTTGC AAATGGAGGA GTTTCTAAGA AGATAATAGA TGAAGAGGCT
AGACAAGAAT ATAAAGAAGA CATGAAATAT GTAAATGAAA TTCTTAACCT TGGATTGGAT
TATGATTTCT TAAACGAAAA TGAATTCTAC CATACTTTAC TTAAAACTAC AAAACCTATA
ATTATGCACT TAATGGGACT TGAGGAAAAT GTAATGCGTA ACAGCACAGA AGAACTTAAA
ATCCTAAATG AGTGGATAGT AAGAATGGGT AAAGTAAGAG GAAGTATAGG CTAA
|
|---|
| Protein sequence | MKIPCSMMTQ HPDNVETYIS IQQEPAEAIK GLTPQDKGGL GIEEVMIDFE GKLTPYHQTS
QIALGLISNG IIPGKDVRVT PRIPNANKES VFRQLMSIMS IIETNVQSKE LTGIPAISEV
VVPMIETGKE ISEFQDRVNS VVDMGNKNYK TKLDLNSVRI IPLVEDVPAL ANIDRILDEH
YEIEKSKGHV LKDLRIMIAR SDTAMSYGLI SGVLSVLMAV DGAYKWGEKH GVTISPILGC
GSLPFRGHFS EENIDEILAT YSGIKTFTFQ SALRYDHGEE ATKHAVNELK AKIAESKPRN
FSEEDKDLMK EFIGICSKHY LQTFLKVIDT VSFVSDFIPK NRDRLTKAKT GLEYNREVAN
LDNVADLVKD EVLKQEILSI DNSKEYAVPR AISFTGAMYT LGMPPELMGM GRALNEIKTK
YGQEGIDKLL EIYPILRKDL AFAARFANGG VSKKIIDEEA RQEYKEDMKY VNEILNLGLD
YDFLNENEFY HTLLKTTKPI IMHLMGLEEN VMRNSTEELK ILNEWIVRMG KVRGSIG
|
|---|
| |