Gene CPF_1289 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1289 
SymbolcobT 
ID4202333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp1463088 
End bp1464173 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content31% 
IMG OID638082170 
Productnicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 
Protein accessionYP_695735 
Protein GI110799489 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2038] NaMN:DMB phosphoribosyltransferase 
TIGRFAM ID[TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00800623 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAAATG AGGTGTTAAA AGGAATAGAA GGTTTAGATA ATGACATGAT TTTAAAAGCT 
AAAAATAGAG TAGATTCTTT AGCTAAACCT TTAGGAAGTT TAGGGAAGTT AGAAGATATA
GCCATAAGGT TATCTGGAAT AACTGGGAAT ATGTTTAATA ATATTGATAA AAAGTGTGTG
ATTATAATGT CTTCTGACAA TGGAGTTGAA GAAGAAGGAG TAGCCTCAGC ACCTCAATGT
GTAACCTTAC TTCAAACAAA AAACTTTATA AAAGGTACTA CGGGAGTAGC TACATTGGCA
AAATCTAATG GAACAGATTT AATGGTTTTT GATGTGGGAA TTAATTCAGA TGAAGTTGTA
GAAGGAGTTA TAAATAGAAA GATATCAAAG GGAACTAAAA ATATTTATAA GGAACCAGCT
ATGACTTATG AAGAAGCTAA AAAATCCTTA GAAATCGGAA TAGAAGCTGT AAAAATAGCT
AAGGAAAAGG GATATAAAAT ACTTGGAGTA GGTGAAATGG GAATAGGAAA TACCACTACT
TCAGCAGCAG TATTAAAAGC TCTTATTGGG TGTGAAACTT CTCAAGTAGT AGGAAAAGGT
GGCGGAATAA ATAATGCTTC TTTTGAAAAG AAAAAAAGAA TTGTAGAAGA AGTGGTTAAA
AAACATAATA TTAATTTTGA TGATCCTATT GATATTATTT CAAAGGTTGG AGGATATGAT
ATTGGAGCAA TGACAGGTGT ATTTTTAGGA GCAGCTTTCT ATAGAATCCC TGTAGTGATA
GATGGATTTA TATCCGTTGT GGCAGCTCTT TTAGCTAATA GATTAAATCC TTTAGTTAAA
GAATTTTGTT TTACTTCTCA TAAATCACAG GAAATAGGAT ATGAGTTAGC TATAAAAGAG
TTAGGTTTAG ATCCTATGTT AGATTTAAAT ATGAGATTAG GAGAAGGAAG TGGATGCCCA
ATAGCTTTCT CAGTAATTGA TTTTGCAACA GCCATGATGA ATAATATGGC AACCTTTGAA
GAAGGAAATA TAGATAACAG CTATTTAGAA GATGTAAAGG ATGAAGAATG TTATATTGTT
CTTTAA
 
Protein sequence
MLNEVLKGIE GLDNDMILKA KNRVDSLAKP LGSLGKLEDI AIRLSGITGN MFNNIDKKCV 
IIMSSDNGVE EEGVASAPQC VTLLQTKNFI KGTTGVATLA KSNGTDLMVF DVGINSDEVV
EGVINRKISK GTKNIYKEPA MTYEEAKKSL EIGIEAVKIA KEKGYKILGV GEMGIGNTTT
SAAVLKALIG CETSQVVGKG GGINNASFEK KKRIVEEVVK KHNINFDDPI DIISKVGGYD
IGAMTGVFLG AAFYRIPVVI DGFISVVAAL LANRLNPLVK EFCFTSHKSQ EIGYELAIKE
LGLDPMLDLN MRLGEGSGCP IAFSVIDFAT AMMNNMATFE EGNIDNSYLE DVKDEECYIV
L