Gene CPF_1243 details

Gene Information

• Locus tag: CPF_1243
• ID: 4203114
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 1415500
• End bp: 1417371
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 25%
• IMG OID: 638082124
• Product: sensory box histidine kinase
• Protein accession: YP_695689
• Protein GI: 110801193
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGGATT TTAATTTTGA AGAAATATTA GAGTCATGTC CTATGGATTA TATTTATGGG 
AAGCTAAAGA ATAAAGATTC TAGTGATTTA TTTGTACTTA AGTCTAGCAT AAAAGAATTT 
AATAGCAAAT TGTTAAGTGA AGTACTAGGT AGTGATATAG ATTTTAAAAC TATATTTAGT 
AAAAGTAATA TTCATGGAGA AGGGTATTAT AAAGACTTAA ATGAAAACTT TAGTTTAAAG 
CTTCTTAATA ATGATTATGT AATTATTTGG TTTAGTCAAT ATTTATTGGA GAAATATAAT 
AAACTAGAAA TTAATCTAAA AAAAGAAAAA GACATGTTAG ATTTATTTTT AGATTCTTTA 
ACAGATTACG TATTTTTTAA GGACATTGAT GGAAGATATA TAAATTGTAA TAAGGCTTTT 
GAAAATAAAG TTGGAATTGA GAAAAAATAT ATAATTGGAA AAACTGATAA AGATATATTT 
TTTGATGATC CAAGTAAGGT AGAAACATTT ATTAAAACAG ATAGAGAGGT TATTAATTCA 
AGAGAAAAGA AAGTTTATGG TGAAGAATGG GGATTTGAAT GTGAAGATGG GTATTTAGAA 
GAGACTGTAA AATCCCCATA TTTTGATGAA AACAATGAAG TTAAAGGTAT AATTGGACTA 
ACAAGGGACA TTTCCTATAA AAAAGCTATA GAATATAGGC TTAAGAAAAA TGATAAAATG 
TTTTTTGAAG TTTTTAATTA CTTAGATGAT GTTGTAATTA TAAAAGAAGG AGAAAAAACT 
ATTTATGTAA ACCATGCCTT TGAAAAATTA TATGGATTAA ATTGTAAAGA GTTATATAAA 
GAAAAAAGTA TGATTGTGAA ATTAGATAGA ATTCATCCAG AGGATAGATA TAAGTTTAGT 
AATATTGATT TTGGGAATTT TTTTATGGAG AAGGCTAGAA TTGTTAGAGC AGACAATGAA 
GTTAGAAATG TTTTGTTTAG AGCAAACTCC ATAAAAAATG AAAATGGAGA ATCTATAAGG 
AGAATCATAG TTATAAATGA TATTACAGAT ACTATAGAAA AAAGTAATGA GATGGAAAAG 
CTTAGAGTGG AGTTCTTTGC TAATATATCT CATGAATTTA AGACACCTGT AAATTTAATA 
TACAGTGCAC TTCAGCTTTT AGAATTAAAG TTGAAAAATA ATATAGATAG GAATGAAGAG 
AGTTATATTA ATTATATTAA AATGGCTAAG CAGAATGTTT TTAGATTATT AAAGTTAATA 
AATAATTTAA TAGATAGTAC TAAGCTAGAA GCAGGCTTTT TTAATGTTAA TATTAAAAAT 
CATGATATAG TAAGTTGTGT TGAGGATATA ACAATGTCTA TATGTGGTTT TGCTGAAAAA 
AATAAAATTT CCATAACTTT TGATACAGAA GAGGAAGAAA AAATAATTGC TTTTGATTTG 
AATCATTTAG AAAGGATACT ATTAAATATT TTATCCAATG CTATAAAATT TAATCGGGAA 
AATGGTAATA TAGATGTCTA TATGAGTTTT GATGAAAGGT ATGCAAATAT AAGTATTAAA 
GACACGGGTA TAGGCATACA AAAGGATAAA ATAGACTTGC TTTTTCATAG ATTTAAAAAA 
ATAAATAATA GATTAACCAA GGTTAATGAG GGAAGTGGAA TAGGACTTTT TATAGCTAAG 
GAGCTTGTAA AAATTAATGG GGGTGAGATG AGAGTTAATA GTGAACTAGG AGAAGGAACA 
GAGTTTATAA TAAAACTTCC AATTAAAAAG ATTGAAAGTG AAGTTTTAGA TGAGATAGCC 
TTAACATCCT GTGAAAGAGA AAATAGAGAA GAACTTTACA AAGTGGAATT ATCAGATATT 
TATAGCCTTT AG 

 

Protein sequence

MKDFNFEEIL ESCPMDYIYG KLKNKDSSDL FVLKSSIKEF NSKLLSEVLG SDIDFKTIFS 
KSNIHGEGYY KDLNENFSLK LLNNDYVIIW FSQYLLEKYN KLEINLKKEK DMLDLFLDSL 
TDYVFFKDID GRYINCNKAF ENKVGIEKKY IIGKTDKDIF FDDPSKVETF IKTDREVINS 
REKKVYGEEW GFECEDGYLE ETVKSPYFDE NNEVKGIIGL TRDISYKKAI EYRLKKNDKM 
FFEVFNYLDD VVIIKEGEKT IYVNHAFEKL YGLNCKELYK EKSMIVKLDR IHPEDRYKFS 
NIDFGNFFME KARIVRADNE VRNVLFRANS IKNENGESIR RIIVINDITD TIEKSNEMEK 
LRVEFFANIS HEFKTPVNLI YSALQLLELK LKNNIDRNEE SYINYIKMAK QNVFRLLKLI 
NNLIDSTKLE AGFFNVNIKN HDIVSCVEDI TMSICGFAEK NKISITFDTE EEEKIIAFDL 
NHLERILLNI LSNAIKFNRE NGNIDVYMSF DERYANISIK DTGIGIQKDK IDLLFHRFKK 
INNRLTKVNE GSGIGLFIAK ELVKINGGEM RVNSELGEGT EFIIKLPIKK IESEVLDEIA 
LTSCERENRE ELYKVELSDI YSL