| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1223 |
|---|
| Symbol | |
|---|
| ID | 4203555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 1391813 |
|---|
| End bp | 1392976 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 638082104 |
|---|
| Product | sodium:dicarboxylate symporter family protein |
|---|
| Protein accession | YP_695669 |
|---|
| Protein GI | 110800158 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00163296 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGAAAT TATTTAATAA TCTTATTTTT AAACTTGTTT TAGGTGTTAT ATTAGGAATA
ATAATAGGCA CATACTCTTC AGAGGGGCTT ATGTCAACAA TTGTGACAAT TAAGTATGTA
TTGGGACAAA TTATATTTTT CTCTGTTCCA CTTATTATTT TAGGATTTAT AGCTCCATCT
ATTGCTAAAT TAAAAGATAA CGCAAGCAAA CTATTAGGAT ATGCTGTTTT AATAGCTTAT
TTATCTTCAG TTTTTGCTGC TATTCTTTCA ATGATTGCAG GATATGCATT AATACCTAAA
TTATCTATAG TATCTAATAT AGCATCATTA AAGGAATTAC CAGAACTTAT ATTTAAATTA
GATATACCAC CAGTTATGAG TGTAATGAGT GCGTTAGCTT TAGCATTACT TTTAGGATTA
GCTGTTGGAT GGACAAAGGC TGATTTAGTA GAAAAGCTTT TAGATCAATT TCAAGCTATA
GTACTTAGTA TTGTAAATAA AATAATAATA CCAATATTAC CATTTTTCAT AGCAACTAAC
TTTGCAGCTT TAGCTTATGA AGGAGGATTA AGTAATCAAC TTCCTGTATT CTTTAAAGTT
ATATTAATTG TATTATTTGG TCATTTTATA TGGTTAACAA TTTTATATTT AATAGGTGGA
GCAATATCAA AAGAAAATCC ATGGGAAGTT GTAAAGTATT ATGGACCAGC ATATCTTACT
GCAGTAGGTA CAATGTCAAG TGCAGCAACA TTACCAGTAG CTTTAGAGTC TGCAAAGAAA
TCAAAGGCTT TAAGAGAAGA TATAGTGGAT TTTGCAATAC CATTATGTTC AAACATACAT
TTATGTGGTT CAGTTCTTAC AGAAGTATTC TTTGTAATGA CAGTATCTCA AATTTTATAT
GGTAAGATTC CGAGTTTACC AACTATGATA TTATTTATAG TATTATTAGG GGTGTTTGCA
ATCGGGGCAC CAGGAGTCCC TGGGGGGACA GTAATGGCAT CATTAGGTTT AATAATTAGT
GTATTAGCCT TTGATGAGGC TGGGACAGCT CTTATGTTAA CAATATTTGC TCTTCAAGAT
AGTTTTGGAA CAGCATGTAA TGTAACTGGT GATGGAGCAA TAGCTCTTAT GCTGACAGGT
ATAGCAAAGA AAAAGAACTT ATAA
|
|---|
| Protein sequence | MKKLFNNLIF KLVLGVILGI IIGTYSSEGL MSTIVTIKYV LGQIIFFSVP LIILGFIAPS
IAKLKDNASK LLGYAVLIAY LSSVFAAILS MIAGYALIPK LSIVSNIASL KELPELIFKL
DIPPVMSVMS ALALALLLGL AVGWTKADLV EKLLDQFQAI VLSIVNKIII PILPFFIATN
FAALAYEGGL SNQLPVFFKV ILIVLFGHFI WLTILYLIGG AISKENPWEV VKYYGPAYLT
AVGTMSSAAT LPVALESAKK SKALREDIVD FAIPLCSNIH LCGSVLTEVF FVMTVSQILY
GKIPSLPTMI LFIVLLGVFA IGAPGVPGGT VMASLGLIIS VLAFDEAGTA LMLTIFALQD
SFGTACNVTG DGAIALMLTG IAKKKNL
|
|---|
| |