| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1220 |
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| Symbol | |
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| ID | 4202635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 1384213 |
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| End bp | 1385850 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 22% |
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| IMG OID | 638082101 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_695666 |
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| Protein GI | 110799538 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.12727 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATA GAAAAAAGAA ATATTTTTTA ATTTTATTAA TTTTTTTAAT AGTTATTAAT
TTATTTATAT TTTCTTTTTA TAAATTTAAA GTAAATAAAA AAAATGAAAA ATATATAAAA
AAAACTAATG TAATTTTATA TGAATCTAAA TTAGAGATGA AAAAAAGAAA TTTTAAAGAT
TCTGAAAATA AACTTTATTC AATTATAGAT AATAAAGATA TGTTTTATAG TTTACCTGAT
AATTTAAAGT TCGAAATTTA TAATTATTTA GCTATAATAA ATCTTCAACA AGAAAAATTT
TTAAATGCTT TATCTTATTA TGAAGAAGCC TTTAAATATG CTGATAAAGA GTCAAAGATA
ATTATTAAAC TAAACATGAC ATCTGCTTAT AGATATATGG GGGCCTATGT TACTGCTACT
AATATTTTAG ATAAAATGCT AGATTCATCA TTATTATTTA GGAATGAAGA TTCTTACCTT
AAAGAATATA CTTTATTAAA CTTAGCTGAA ACTTATTTTG CTGTAAATGA TATGACTGAT
TTTAACTCTA CAATAGCAAA GGCATCTAAC TCTTATTATT ATGGCCCTGA AAATGATTTA
GAAGACTTAA AAATCCTTTT AGATTCCTAT TTAATAATAA AAGCAATATC AGAAAATAAT
CTTGATTTAG TACCAAACTA TATTTCTGAA ATAGAAGAAT TAGAGATTAA AAATAAAGAT
GTTATATATT CTGAATTAGA AATGATTAAA ACTCGTTCTT ATGGTATGTA CTATAAAAGT
ATTGGAGATT TTGATCTAGC ATTAGACTAC TTTTCAAAAC TAGAAAAATT AGCTGATAAT
GAAGGTGCTT CTTATGTTTC ACTTTTTTCT ATCAGCGAAA GAATATCAAT TTATAGAAAA
CTAAATGATA ATAAGCAGGT AGATTCTTTA ATAAATAAAT ATTATGAAAA ACAAACTTCA
ATAAATGATA TAAATAACTA TGAATTTAAA TATTATATAG ATAATAAAAT TATAAACAAT
CACGAATTAC CATTTTTAAA AGAGACCATT ATTATTTTGA TAATTCTATT TTTAACCTCT
ATTCTATTAG TGCTTTTTTA CTTAAAAAAA GCTAGGGATT CAAAATTAGA TTCTTTAAAA
GATGGGCTTT GCAATATTTA TAACAGGCGT TTTTTAGACT CTTACATAAA TAATTTAAAA
GAAAAAGATT TGCCTATTTC TTTTCTAATG ATAGATGTAG ATTATTTTAA ACTTTATAAT
GATAATTATG GTCATCAAGC TGGTGATTTT ATACTAAAAA GTATAGCCTC TGTACTTGAA
AAAAACTCTC GTAAAGAAGA TATAGTTGCA CGTTATGGAG GGGAAGAATT TTGTGTTTTA
CTAAAAGGTG CTTCTAAGTA TTCTTCTATT AACTACGCTA AAAGAATCAA AGAAAATTTA
GATAATTTAA ATATAAAACA TAAATATTCA AAGACTTCAG ACCATGTAAC CTTTAGTATT
GGAATATATA CTACATATAC TAAAAATGAT CTGAAAAATG CAATTAAATT TTCTGATAAA
GCACTATATA TATCTAAAAC AAGAGGAAGA AATACCTATA CTTATCTAGA AGATAACTCT
TCTGATTCTT CTAATTAA
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| Protein sequence | MKNRKKKYFL ILLIFLIVIN LFIFSFYKFK VNKKNEKYIK KTNVILYESK LEMKKRNFKD
SENKLYSIID NKDMFYSLPD NLKFEIYNYL AIINLQQEKF LNALSYYEEA FKYADKESKI
IIKLNMTSAY RYMGAYVTAT NILDKMLDSS LLFRNEDSYL KEYTLLNLAE TYFAVNDMTD
FNSTIAKASN SYYYGPENDL EDLKILLDSY LIIKAISENN LDLVPNYISE IEELEIKNKD
VIYSELEMIK TRSYGMYYKS IGDFDLALDY FSKLEKLADN EGASYVSLFS ISERISIYRK
LNDNKQVDSL INKYYEKQTS INDINNYEFK YYIDNKIINN HELPFLKETI IILIILFLTS
ILLVLFYLKK ARDSKLDSLK DGLCNIYNRR FLDSYINNLK EKDLPISFLM IDVDYFKLYN
DNYGHQAGDF ILKSIASVLE KNSRKEDIVA RYGGEEFCVL LKGASKYSSI NYAKRIKENL
DNLNIKHKYS KTSDHVTFSI GIYTTYTKND LKNAIKFSDK ALYISKTRGR NTYTYLEDNS
SDSSN
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