| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1171 |
|---|
| Symbol | |
|---|
| ID | 4201591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 1336302 |
|---|
| End bp | 1337534 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 638082052 |
|---|
| Product | sensor histidine kinase |
|---|
| Protein accession | YP_695617 |
|---|
| Protein GI | 110801284 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3275] Putative regulator of cell autolysis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.400646 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATT TATTAGATAT TAGAGAGATT TTAGATGTTA ATTCCTTTCA AAAAATACAA
GATGATATAG CTAAAGCAAC TGAGTTTGCT ATGATTACAG TAGATTACAA AGGAATACCA
GTTACTAAGC ATAGTAGATG TAGTGAGTTT TGTAGATTAA TAAGAGAACA AAAAGAGTTC
TCGAAATTAT GTGAAAAATG TGATTCAAGA GGTGGATTAG AAGCTGCTAG AGAGGGAAGT
TTTTACATAT ATAAATGTCA TAGAGGTCTT GTGGATGTGG CTGTTCCAAT AATAATTGAT
GGACAATATC TAGGGGCAGT TATGGTAGGA CAAGTTTTAT TGATGGATGC AGATGATCAT
GAATTAGAAG CTGTTTTGAC TAAGGAGTTA GAATATGATT CAGAGATAAA AGATAAAATT
ATTGATGCAT ATGAAAAAAT ACCAGTTCTT AGTTTTGATA AAATAAAAGC TGTTTCAGAG
ATGATGTCTC ATGTAAGCAA TTACATTGTT GAGGAAGCCT TACTTAAAAG AACTCAAAAT
GAGATTTATA CAAAAAATAT AGAAATTGCA AGAGCAGAGA GAAGTAAGTT AGAACTTGAA
GAGGAATACA AAGCTTGTCA GCTAAAAGCT CTTCAATCTC AAATAAACCC ACATTTTTTA
TTTAATGTAT TAAATAGCAT AGCATCTTTA GCAATTATAG AGGATGCCCC TAAAACTCAA
GAAGTAATTT ATAATTTGTC GTATATTTTA AGGTACACTT TAAAGAAAGC TAATAAAATT
GTAAGACTTA GTGAAGAAAT AAATCATGTT AAGGCATATT TAGAAATTCA AAAGGTTCGT
TTTGGTGAAA GAATACAATA TAATATAGAT TTTGATGAAG AGGATTCAAA TGTACAAATT
CCATTTATGG CACTTCAAGT TTTTGTTGAG AATGCAGTTT TGCATGGGAT TGAGGAAAAA
GAACAGGGGG GAACCATAAA CCTATCAATT AAGAGTAGAG GAGATGATAT GATTATTACT
ATTTCTGATG ATGGTGTTGG AATATCAGTT GAAAAACTCT GCGAAATTAG AAATGAAATA
AAAAGTAGAG ATAAACTAGA TTTAGATAAA GTCGGCATAA ATAATGTAAA TAAGAGAATG
TTTCATTATT ATGGTGAAGA ATATAGTATA AATATAGATA GTAAAGTTAA AAAAGGTACT
AAAGTAGAAA TTATAATACC TAGAAAACTT TAA
|
|---|
| Protein sequence | MANLLDIREI LDVNSFQKIQ DDIAKATEFA MITVDYKGIP VTKHSRCSEF CRLIREQKEF
SKLCEKCDSR GGLEAAREGS FYIYKCHRGL VDVAVPIIID GQYLGAVMVG QVLLMDADDH
ELEAVLTKEL EYDSEIKDKI IDAYEKIPVL SFDKIKAVSE MMSHVSNYIV EEALLKRTQN
EIYTKNIEIA RAERSKLELE EEYKACQLKA LQSQINPHFL FNVLNSIASL AIIEDAPKTQ
EVIYNLSYIL RYTLKKANKI VRLSEEINHV KAYLEIQKVR FGERIQYNID FDEEDSNVQI
PFMALQVFVE NAVLHGIEEK EQGGTINLSI KSRGDDMIIT ISDDGVGISV EKLCEIRNEI
KSRDKLDLDK VGINNVNKRM FHYYGEEYSI NIDSKVKKGT KVEIIIPRKL
|
|---|
| |