| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1151 |
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| Symbol | |
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| ID | 4201594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | + |
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| Start bp | 1316688 |
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| End bp | 1317374 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 638082032 |
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| Product | RNA pseudouridine synthase family protein |
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| Protein accession | YP_695597 |
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| Protein GI | 110801287 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000576228 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGAATAA ACAAGCTTTT TAGCAATTTT GGGATATGCT CTAGAAAAGA AACTAATAAA
ATTATTAGAG AGGGAAGGGT TATTGTTAAT GGCAAGCCAT GTATTGAGGG GCAATGGGTT
GAATTAAGTG ATGAAATACT TTTAGATGGA AAACCCTTAG TTCCAAAGGA AAAGATTTAT
ATAGCACTTA ATAAGCCTGT AGGAGTTGTA TGTACTGCTG CAGAAGAAGT TAAGGATAAT
ATAATAGATT ACTTAGGGAT AGATGATTAT GTTTTTCCAA TAGGAAGACT AGATAAGGAC
TCTCAAGGAT TAATAATTTT AACTAATGAT GGAGATTTAG CAAATGAAGT TTTAGCAGCA
GAAAATAACC ATGAAAAGGA ATATATAGTA ACCTTAGATC AACCTTTTTA TGATGATTTT
ATTGAAAAGA TGGAGCGTGG TGTTGAAATA TTAGGACAAG TAACAAAACC TTGTAAACTA
AAGAGAATAA ATGAAAATAC CTATTCAATA ATATTAACTC AAGGGTTAAA TAGACAAATA
AGAAGAATGA GTAAGGTTTT TGGCTTTAAT GTAGTTAAGT TAGAGAGAAT TAGAATTCTT
AATATAACTC TTGAAGACAT AGAATATGGA AAGTGGAGAT ATATAAATAG GGAAGAAATT
GAGATTTTAA AAAAACTTAT AAAATAA
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| Protein sequence | MRINKLFSNF GICSRKETNK IIREGRVIVN GKPCIEGQWV ELSDEILLDG KPLVPKEKIY
IALNKPVGVV CTAAEEVKDN IIDYLGIDDY VFPIGRLDKD SQGLIILTND GDLANEVLAA
ENNHEKEYIV TLDQPFYDDF IEKMERGVEI LGQVTKPCKL KRINENTYSI ILTQGLNRQI
RRMSKVFGFN VVKLERIRIL NITLEDIEYG KWRYINREEI EILKKLIK
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