| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1111 |
|---|
| Symbol | |
|---|
| ID | 4202865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 1267397 |
|---|
| End bp | 1268917 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 25% |
|---|
| IMG OID | 638081992 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_695557 |
|---|
| Protein GI | 110801096 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000128485 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAAA TACTATTAGT AGATGATGAG GCTACAGAAC GTGAAGGAAT TGAATTTCTT
ATAAAAAGAT ATGAATTTCC TTTGAATATA GCTAAAGCTG TAAATGGAAA AGAAGCTTTA
GAATACATAA AGAAAAATCA TATAGATATT CTTTTTACAG ATGTAAAAAT GCCTTTCTTG
GATGGACTAG AATTAGCAAA GGAAACCTTT AAGTATGATC CTAAAATTAG AATAATAATT
TTTAGTGCAT ATAGTGAATT TGACTATGCT AAAAAAGCCT TAGAGGCAAA AGTGGTTGAT
TATTTACTTA AACCTATTGA GGTGGATGAA TTTAAAAGAG TTATGGAAGA GGTAATAAAA
AGCTGCATAA AAAGAAAGGA AGAAGAGAAA GAAAAAGAAT TACTTATGGA ATCAAGCAAG
AAGATGTTAC TTTATAAGCT ATTAGCTAAT CACAACAACC AAAATGATAT TAATGAAAAG
TTAAACGTAT ACAATATACA GTTGAAAGAT AAATATTTAG TATTAATAAA CATAGAGACA
AGAGATAACT TTTTTGAGGA GAAGGAGGAG ATTTTCTTTA ATCTCTTAAA TACATATTTA
AAAATTCCAT ATGAATATAT AAATTTTTAT CCTAATGAAT CATATTTATT ATTGCATAGC
AATTTAAAAA TAAAAGAGGA TTTTTTAGAA GAAGTTTGTT TTAAATTAGC CAGAGAAATT
AAATTATTAG CCAATGAAAA CTCTTCTTTT TTTATTAGTA ATGTATTTTG TGGAATTGAA
AAAATCTATG ATAAGGTAAA GGGATTAAAT AATATAAAGG AAAATATTTA TGATTTTGAA
TCAAGGATTA TTAGGGTTAA TAAGGATAAA ACTAATGATT TATACACACT TGAAATAGAG
AATGTAAAGG AAAATCTTAA AAACTCTATA AATGAAAGAA ATTTAAATGA TATTGAATTT
TACATAAATA AGCTTATAGA ATACATGTTA GAATCAGGTT CACTTAGTAC TATATACATA
CATCACCTTT TTTATGATTT AATGGAAAAA CTTTGTAAAG CCTTTGATAT ATATAATGGT
GAAGTGAAAA AGAGATTTAT AGAAAAGATA TTAAAATGTA ACTCAAGTGA AACCTTAAAA
GCAGCTTTTG AATCTATTAT AAAGGATATT GCAAAGGAAT GTGATAATGA TATTTTAGAC
GAAAAAAGCA TAGCTAACAA AGTGATAAAG ATAATAAAAA ATGAATATAG CAGTGAACTG
AGTTTAGATT ATATTGCAGA TAAGGTTAAT TTTACGCCAA CCTATTTAAG CTATGTTTTT
AAGAAAGAAA CAGGCTCAAA CATAGTTAAA TATATAACTG ATTTTAGAAT GAATAAGGCT
AAGGAGTTTT TAGAAGAAGG TAATATGAAA ATTGTACAAG TTGGTAAGGC CTGTGGATAT
GAAAATCAAT CATACTTTAA CCGTATATTT AAGAATTATT TTGGAGTAAC TCCAAATCAA
TTTAAACGTA AGAATAGTTA A
|
|---|
| Protein sequence | MLKILLVDDE ATEREGIEFL IKRYEFPLNI AKAVNGKEAL EYIKKNHIDI LFTDVKMPFL
DGLELAKETF KYDPKIRIII FSAYSEFDYA KKALEAKVVD YLLKPIEVDE FKRVMEEVIK
SCIKRKEEEK EKELLMESSK KMLLYKLLAN HNNQNDINEK LNVYNIQLKD KYLVLINIET
RDNFFEEKEE IFFNLLNTYL KIPYEYINFY PNESYLLLHS NLKIKEDFLE EVCFKLAREI
KLLANENSSF FISNVFCGIE KIYDKVKGLN NIKENIYDFE SRIIRVNKDK TNDLYTLEIE
NVKENLKNSI NERNLNDIEF YINKLIEYML ESGSLSTIYI HHLFYDLMEK LCKAFDIYNG
EVKKRFIEKI LKCNSSETLK AAFESIIKDI AKECDNDILD EKSIANKVIK IIKNEYSSEL
SLDYIADKVN FTPTYLSYVF KKETGSNIVK YITDFRMNKA KEFLEEGNMK IVQVGKACGY
ENQSYFNRIF KNYFGVTPNQ FKRKNS
|
|---|
| |