Gene CPF_1102 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1102 
Symbol 
ID4202882 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp1258382 
End bp1259071 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content23% 
IMG OID638081983 
Producthypothetical protein 
Protein accessionYP_695548 
Protein GI110800298 
COG category[S] Function unknown 
COG ID[COG2717] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.000000717083 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTACTTA TAATTTCATT ATTAATAACA ACAGTCTTGA GTATTGTTTT TTATAAAGAA 
ATAAAAAAAT ATTCTTCAAT ACTCTACATA ATAGCTACTT TAATAGTTGT ATTTTTCATA 
GTATTTATGA AAACCGATCT ACATAACTAT ATTCCTAAAC ACATAAGTAA ATACACCATA 
GGAGTATTCT CTAAAAGTAC TTTTTCCTTA GCTTTATTTA CTATAGTAAT GTACACTGGA 
GCTTTAAGTA ATTCATTTAA ATATAAGAAA AACCTAATGG CTATAAGAGG CGAACTTTCA 
ATAATCGCTT GTATCTTAAC CTTAGGTCAT AATATTTTAT ATGGAATATA TTATTTCCCT 
ACATTCTTTA CTAACCCACA TTCTTTAACT TATTATAAGT TTTTTGCAAC TTTATTAAGT 
TTAATCATGA TATGCTTAAT GATTCCTTTA ATGATCACTT CATTCCAATG TGTAAGAAAA 
AAAATGAACT ATAAAACATG GAAAAAGATT CAAAGGTCAG CATATTTATT TTATGGTTTA 
ATGTACATAC ATATAATGCT TTTATACATA CCAAAATTTG ATAAGAAACT TTTTGAAATA 
ATATTATATA GTATTATATT CTTTACATAC TATTTCTTAC GTATAAGAAA GTATTTTAAA 
GATAAATCTA AACCTTGTTT TAGCAAATAA
 
Protein sequence
MLLIISLLIT TVLSIVFYKE IKKYSSILYI IATLIVVFFI VFMKTDLHNY IPKHISKYTI 
GVFSKSTFSL ALFTIVMYTG ALSNSFKYKK NLMAIRGELS IIACILTLGH NILYGIYYFP 
TFFTNPHSLT YYKFFATLLS LIMICLMIPL MITSFQCVRK KMNYKTWKKI QRSAYLFYGL 
MYIHIMLLYI PKFDKKLFEI ILYSIIFFTY YFLRIRKYFK DKSKPCFSK